Curator Dashboard

Software package for peptides designing and prediction. In silico approach for predicting toxicity of peptides and proteins. Used for predicting peptide toxicity or non toxicity, minimum mutations in peptides for increasing or decreasing their toxicity, toxic regions in proteins.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

Interactive Python based interface to Rosetta molecular modeling suite. Stand alone Python based implementation of Rosetta molecular modeling package that allows users to write custom structure prediction and design algorithms using major Rosetta sampling and scoring functions.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

Web service is extension of classic ProSA program used for refinement and validation of experimental protein structures and in structure prediction and modeling.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

Software R package for mathematical modeling of infectious disease over networks. Provides tools for simulating and analyzing mathematical models of infectious disease dynamics. Mathematical Modeling of Infectious Disease Dynamics.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

Framework and software to estimate time varying reproduction numbers during epidemics. Tools to quantify transmissibility throughout epidemic from analysis of time series of incidence. Used to estimate time varying instantaneous reproduction numbers from incidence time series.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

Software package to analyse nucleotide sequence data and identify evidence of genetic recombination. RDP3 is version of RDP program for characterizing recombination events in DNA-sequence alignments. RDP4 is version of RDP program for detection and analysis of recombination patterns in virus genomes.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

Open source machine learning library based on Torch library, used for applications such as computer vision and natural language processing. Software Python package that provides tensor computation with strong GPU acceleration and deep neural networks built on tape-based autograd system.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

Project for building molecular and digital tools from human proteome to facilitate biomedical research, drug discovery, personalized medicine and life science research.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 2, 2025. Software tool as direct-to-Excel-based software that gives flexibility in data retrieval, storage, and analysis. Software comes preloaded with protocols for Promega luminescent assays. It is also possible to create, store, and retrieve user-defined protocols.

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• RRID-Legacy
• 6 years ago - submitted by Timothy Errington

Software R package for dynamic report generation using Literate Programming techniques. Comprehensive software tool for reproducible research in R.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software package as automated MATLAB based trainable image cell segmentation, fluorescence quantification and analysis suite. Used for high throughput time lapse fluorescence microscopy of in vivo bacterial cells. Robust image segmentation, analysis and lineage tracking of bacterial cells.

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• RRID-Legacy
• 6 years ago - submitted by Zachary Blount

Web server for protein structure prediction, refinement, and related methods. First rebuilds side chains and performs side-chain repacking and subsequent overall structure relaxation by molecular dynamics simulation.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

Web server to predict discontinuous B cell epitopes from protein three dimensional structures.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

Neural network and web server, which determines cysteine oxidation state and disulfide connectivity of protein, given only its amino acid sequence. Used to predict disulfide connectivity topology. Predicts which half-cystines are covalently bound to which other half-cystines. DiANNA 1.1 is extension of DiANNA web server for ternary cysteine classification.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

Software package for data analysis in molecular biology and evolution. Integrated software package for converting, manipulating, statistically and graphically describing, and analyzing molecular sequence data. Used for genomic and phylogenetic data analysis on Windows, Linux, and Macintosh computers.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

Brainarray custom CDFs for processing raw Affymetrix data. Used to map probe to probesets. Oligonucleotide probes on GeneChips are reorganized based on latest genome and transcriptome information.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

Software as open source virtual screening tool. Calculation is based on various druglikeness rules like Lipinski's rule, MDDR-like rule, Veber rule, Ghose filter, BBB rule, CMC-50 like rule and Quantitative Estimate of Drug-likeness (QED). Uses Chemistry Development Kit (CDK), Java library for descriptor calculation. Used for fast calculation of drug like properties of molecule.

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• SciCrunch
• 6 years ago - by Anonymous

Broad range of cheminformatics software tools supporting molecule manipulation and processing, including SMILES and SDfile conversion, normalization of molecules, generation of tautomers, molecule fragmentation, calculation of various molecular properties needed in QSAR, molecular modelling and drug design, high quality molecule depiction, molecular database tools supporting substructure and similarity searches. Molinspiration tools are platform independent and may be run on any PC, Mac, UNIX or LINUX machine. Software is distributed in form of engines, which may be used as stand-alone computational engines, used to power web-based tools, or incorporated into larger in-house Java applications.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web app to generate possible distributions of data matching given mean, SD, sample size, and range. Used for recovering data from summary statistics. Implementation of SPRITE in R programming environment.

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• RRID-Legacy
• 6 years ago - by Anonymous

kit used to analyze RNA quality and quantity

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• RRID-Legacy
• 6 years ago - submitted by Kaira Church