Curator Dashboard

Discrete Morse based pipeline for neuron tracing on tracer injection and single neuron data sets. Automatically generates set of trees summarization of given neuron imaging data. Used to extract tree skeletons of individual neurons from volumetric brain image data, and to summarize collections of neurons labelled by tracer injections.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Open source software R package for inferring large transcriptional networks using mutual information. Implements algorithms for inferring networks such as gene networks from microarray data.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web service for querying or retrieving gene annotation data.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software R package for fast and accurate precision recall and ROC curve calculations. Calculates accurate precision recall and Receiver Operator Characteristics curves.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software package includes tests for trends and change points detection. Used in analysis of environmental data.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web based application for visualization and presentation of HXMS data. Comprises tools helping in preparation of H/D experiments as well as tools for turning simple tables with data on H/D exchange into different ways of representation.

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• RRID-Legacy
• 6 years ago - by Anonymous

Cell viability counter. Touchscreen fluorescent automated cell counter for primary samples by Nexcelom Bioscience.

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• RRID-Legacy
• 6 years ago - submitted by Daniel Jin

BD LSRFortessa system can be configured with up to 7 lasers, blue, red, violet, UV and yellow-green. The instrument can accommodate the detection of up to 18 colors simultaneously with defined set of optical filters that meet or exceed the majority of today's assay requirements. BD FACSDiva software controls the efficient setup, acquisition, and analysis of flow cytometry data from the BD LSRFortessa workstation. The software is common across BD FACS instrument families, including the BD FACSCanto cell analyzer and BD FACSAria cell sorter systems.

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• RRID-Legacy
• 6 years ago - submitted by Daniel Jin

Software toolkit for concretely describing non-canonical polymers and complexes to facilitate global biochemical networks. Web tool for describing molecular structure of macromolecular complexes, including non canonical monomeric forms, circular topologies, and crosslinks. Describes semantic meaning of whole cell computational models.

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• SciCrunch
• 6 years ago - submitted by Jonathan Karr

Software toolkit for unambiguously describing molecular structure of DNA, RNA, and proteins, including non-canonical monomeric forms, crosslinks, nicks, and circular topologies. Aims to help epigenomics, transcriptomics, proteomics, systems biology, and synthetic biology researchers share and integrate information about DNA modification, post-transcriptional modification, post-translational modification, expanded genetic codes, and synthetic parts.

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• SciCrunch
• 6 years ago - submitted by Jonathan Karr

Software toolkit for creating reusable datasets that are both human and machine readable, combining spreadsheets with schemas including classes, their attributes, type of each attribute, and possible relationships between instances of classes.Consists of format for describing schemas for spreadsheets, numerous data types for science, syntax for indicating class and attribute represented by each table and column in workbook, and software for using schemas to rigorously validate, merge, split, compare, and revision datasets. Used for supplementary materials of journal article, as well as for emerging domains which need to quickly build new formats for new types of data and associated software with minimal effort.

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• SciCrunch
• 6 years ago - submitted by Jonathan Karr

Software toolkit for discovering data needed to build, calibrate, and validate mechanistic models of cells. Integrated database of molecular data for quantitatively modeling cellular behavior. Web application for identifying relevant data for modeling specific organism in specific environmental condition.

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• SciCrunch
• 6 years ago - submitted by Jonathan Karr

Triple stage quadrupole mass spectrometer for low level quantitation and has mass range of mass per charge 10 to 1800 mass per charge. Laboratory room temperature must be maintained between 18 to 27 C and cannot change by more than 5 C.

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• SciCrunch
• 6 years ago - submitted by Leah Booher

High performance liquid chromatographic system with quaternary, low pressure mixing pump and inline vacuum degassing. It has wavelengths of 190 to 800 nm and flow rates from 50 uL per min to 5 mL per min with 2.1 mm ID columns and larger. Autosampler has maximum capacity of 120 vials (12x32, 2 mL) with programmable temperature control from 4 to 40C. Heated column compartment provides temperatures from 5 degrees above ambient to 65C.

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• SciCrunch
• 6 years ago - submitted by Leah Booher

Plate reader that automates dynamic light scattering measurements on macromolecular and nanoparticle samples in situ in 96, 384, or 1536 well microplates. It screens for particle size, thermal stability, aggregation temperature tonset, colloidal stability via diffusion interaction parameter kD or D1, and viscosity of protein solutions.

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• SciCrunch
• 6 years ago - submitted by Leah Booher

Optical tweezers system for contact free cell manipulation as well as to trap, move, and sort microscopic particles, sort live cells, organelles, and other large biomolecules.

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• SciCrunch
• 6 years ago - submitted by Leah Booher

Automated wide range incubator used to minimize plate movement, receive samples, store plates, and track plates.Temperature range is from 10 to 50 degrees Celsius with humidity level of up to 95 rH.

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• SciCrunch
• 6 years ago - submitted by Leah Booher

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 12, 2024. Transmission electron research microscope with accelerating voltages of 120 and 200kV and has magnification from 80X to 1,000,000X with resolution line of 0.12nm.

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• SciCrunch
• 6 years ago - submitted by Leah Booher

Benchtop incubator microprocessor controlled, gassed, humidified, incubator intended for use in cell culture. It is designed to maintain temperature between 35 and 40 degrees celsius and gas flow within range of 15 to 25 ml min.

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• SciCrunch
• 6 years ago - submitted by Leah Booher

Immunohistochemistry processor that can be used for immunohistochemistry and in situ hybridization slide preparation and processing.

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• SciCrunch
• 6 years ago - submitted by Leah Booher