Curator Dashboard

System includes Thermo Orbitrap Fusion Tribrid mass spectrometer and Waters M-Class Acquity nanoUPLC. This platform features sequential acquisition capabilities and multiple fragmentation types, enabling complex, in depth proteomic experiments.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

LTQ XL ion trap mass spectrometer with Agilent 1100 HPLC system for metabolite identification, stability testing, degradation products, and high abundance quantitation.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Thermo Exactive benchtop Orbitrap operates with Waters Acquity UPLC and generates high resolution, high mass accuracy full MS data. Available to advanced open access users for reversed phase and HILIC LC/MS applications.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Shimadzu 8030 triple quadrupole mass spectrometer used for targeted quantitation applications. Listed by Stanford University Mass Spectrometry Vincent Coates Foundation Instruments.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Scion GC triple quad is applied to targeted trace level analysis of metabolites and other small molecules. Electron ionization combines with MS/MS capability for outstanding selectivity. Samples are often derivatized for compatibility with GC/MS.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Bruker micrOTOF-Q II is benchtop Q-Tof mass spectrometer, applied to applications such as small molecule accurate mass determination, intact protein analysis including antibodies, peptide mapping, and other custom projects. This system is operated with Agilent 1260 UPLC and includes inline diode array detector and ESI source.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Microflex LRF mass spectrometer is specialized for protein, peptide, and polymer analysis. This MALDI-TOF instrument can be operated in linear mode for high mass accuracy characterization, or in reflector mode to achieve enhanced resolution.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Agilent GC/MS is single quadrupole instrument with electron ionization. GC/MS runs under ChemStation open access software, and trained open access users select from menu of standard methods to analyze their samples.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

LTQ-Orbitrap Elite mass spectrometer with Waters nanoAcquity system. Used for proteomic applications.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Web platform for downstream analysis and visualization of proteomics data. Server that facilitates integrated annotation, analysis and visualization of quantitative proteomics data, with emphasis on PTM networks and integration with LINCS library of chemical and genetic perturbation signatures in order to provide further mechanistic and functional insights. Primary input for server consists of set of peptides or proteins, optionally with PTM sites, and their corresponding abundance values.

• Resource
• dkNET
• 6 years ago - submitted by Ko-Wei Lin

Web tool for exploring variants in islet expression quantitative trait loci. Data is result of collaboration between Michigan University Parker lab, Department of Biostatistics and Center for Statistical Genetics at University of Michigan, National Human Genome Research Institute, Jackson Laboratory for Genomic Medicine, Department of Genetics at University of North Carolina, European Bioinformatics Institute, Department of Preventive Medicine at University of Southern California, and Department of Physiology and Biophysics at University of Southern California.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Pennington NORC’s platform includes three scientific Cores: a Molecular Mechanisms Core (genomics and cellular), very closely related to a Human Phenotyping Core (characterization of phenotypes predisposing to obesity and the metabolic syndrome and behavioral interventions to counteract those) and an Animal Models and Phenotyping Core.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Atlas of gene regulatory elements in adult mouse cerebrum. Atlas of CIS elements, providing information on accessible chromatin in individual cells from regions of adult mouse isocortex, olfactory bulb, hippocampus and cerebral nuclei. Uses resulting data to define candidate cis-regulatory DNA elements in distinct cell groups. Many are linked to putative target genes expressed in diverse cerebral cell types and uncover transcriptional regulators involved in broad spectrum of molecular and cellular pathways in different neuronal and glial cell populations. Used for analysis of gene regulatory programs of mammalian brain and interpretation of non-coding risk variants associated with various neurological disease and traits in humans.

• Resource
• dkNET
• 6 years ago - submitted by Maryann Martone

ICC/IF;WB

• Resource
• SciCrunch
• 6 years ago - submitted by Xu Fan

Population based collection of white matter atlases represented in both volumetric and surface coordinates in standard space. These atlases include white matter fascicles derived from different tractography techniques including Automated Fiber-tract Quantification, Automated Fiber-tract Quantification clipped, Recobundles, Tracula, TractSeg, and Xtract.

• Resource
• NIF
• 6 years ago - by Anonymous

Community portal to crowd source viral data collection and viral resources.

• Resource
• SciCrunch
• 6 years ago - submitted by Jeffrey Grethe

Platform developed and operated by Stanford Medicine Research IT team for working with clinical data for research purposes. Permits collection and aggregation of all clinical data generated at Stanford for care purposes, and articulates formal approval process each research project must follow in order to obtain and work with this data for research purpose. Home of stride/web tools for Cohort Discovery and Chart Review.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Software analysis toolkit for single cell RNA-seq. Used for single cell RNA-Seq experiments. Unsupervised algorithm that increases temporal resolution of transcriptome dynamics using single-cell RNA-Seq data collected at multiple time points.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Database contains manually curated natural carbohydrate structures, taxonomy, bibliography, NMR data. Bacterial and Plant and Fungal databases were merged to improve quality of content-dependent services, such as taxon clustering or NMR simulation. These separate databases will be supported in parallel until 2020.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Software R package for structural variant analysis. Contains helper functions for dealing with structural variants in VCF format. Contains functions for parsing VCFs from number of popular callers as well as functions for dealing with breakpoints involving two separate genomic loci encoded as GRanges objects.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous