Curator Dashboard

Provides single particle cryo EM and cryo tomography of plunge frozen samples. Using Titan Krios G3i for high resolution data collection on Gatan K3 Direct Detection Camera facility is able to offer data collection at atomic level resolution.Facility uses Serial EM for SPA and cryo-ET data acquisition.

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• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Software tool accepts image files (like PNG, JPEG and TIFF) containing graphs, and recovers the data points from those graphs. Used to convert graphs to data points. Imports image file and then digitizes it by placing points along axes and curves.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software general R package providing standard methods for meta analysis.

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• RRID-Legacy
• 6 years ago - submitted by Jake Mann

Software package serves as companion R package for online guide Doing Meta-Analysis in R - A Hands-on Guide written by Mathias Harrer, Pim Cuijpers, Toshi Furukawa and David Ebert. Guide shows how to perform meta-analyses in R from scratch with no prior R knowledge required.

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• RRID-Legacy
• 6 years ago - submitted by Jake Mann

Software Python package part of nonnegative matrix factorization NMF. Features various classification, regression and clustering algorithms including support vector machines, random forests, gradient boosting, k-means and DBSCAN, and is designed to interoperate with Python numerical and scientific libraries NumPy and SciPy.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Software tool for macromolecular structure visualization. Molecular visualization framework to visualize crystallographic models of macromolecules. Used to visualize and create publication quality images of macromolecular structures with user friendly interfaces.

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• RRID-Legacy
• 6 years ago - by Anonymous

Core facility responsible for custom adeno-associated virus (AAV) and lentivirus production available through Canadian Neurophotonics Platform. Services include design, cloning and production of molecular constructions in order to produce plasmid expression vectors or to generate transgenic animals and design, including advice and assistance for choice of suitable vectors required by investigators.

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• SciCrunch
• 6 years ago - by Anonymous

Web based gene expression database and analysis platform. Used for integrative data mining of genotype and phenotype data, with optimized workflows.

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• RRID-Legacy
• 6 years ago - by Anonymous

Core provides instruments including Scanalyzer 3D platform which consists of multiple digital imaging chambers connected to controlled environment Conviron growth house by conveyor belt system, resulting in continuous imaging loop and enables repeatedly image plants at multiple points throughout time.RGB imaging allows visualization and quantification of plant color and structural morphology. Near-infrared (NIR) enables visualization and quantification of plant water-use efficiency.Watering and weighing stations are customizable to deliver water and nutrients on specified schedule by volume or weight. Standard phenotyping services include operation and maintenance of LemnaTec Scanalyzer system, as well as technical support and troubleshooting.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Core helps researchers investigate interactions between small molecules and biological systems by providing medicinal chemistry and chemical biology expertise and organic synthesis support.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Refrigerated benchtop microcentrifuge with rotor designed to provide acceleration up to 21,100xg.

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• RRID-Legacy
• 6 years ago - submitted by Raghava Jagadeesh Salaka

Microprocessor based, programmable ultrasonic processor. Features include pulse mode and digital display of both wattage and joules.Used for standard cell disruption, DNA/RNA shearing, homogenization and many other applications.

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• RRID-Legacy
• 6 years ago - submitted by Raghava Jagadeesh Salaka

Software tool as regularization technique that penalizes L2-norm of coefficients in linear regression. Available in two programming languages MATLAB and Python.

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• RRID-Legacy
• 6 years ago - submitted by Ariel Rokem

Web server is focused on protein ligand interactions. Provides support for initial steps when dealing with protein structures, namely structure search, quality assessment, and preprocessing. Furthermore, advanced options, such as protein pocket detection, ensemble generation or prediction of metal coordinations are supported.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software tool to check stereochemical quality of protein structures. Its outputs comprise number of plots in PostScript format and comprehensive residue by residue listing. Includes PROCHECK-NMR for checking quality of structures solved by NMR.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web server for protein subcellular localization prediction with functional gene ontology annotation. Web based system for screening various properties of targeted protein and its subcellular localization.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software tool as molecular graphics program designed to give straightforward and complex static and dynamic representations of macromolecular structures. Used to create publication quality images and movies and to superpose and analyse structures.

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• RRID-Legacy
• 6 years ago - by Anonymous

Open source software tool for reproducible analysis and visualization of intracranial EEG data. Used for analysis of intracranial electroencephalogram data, including data collected using strips and grids (electrocorticography, ECoG) and depth electrodes (stereotactic EEG).

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• RRID-Legacy
• 6 years ago - submitted by John Magnotti

Software tool as SVM based method for prediction of functional proteins of gram negative bacteria using amino acid patterns and composition. Webserver for functional classification of proteins of bacteria into virulence factors, information molecule, cellular process and metabolism molecule.

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• RRID-Legacy
• 6 years ago - by Anonymous

Open source cloud based pipeline and analysis service for metagenomic pathogen detection and monitoring. Hypothesis free global software platform that helps scientists identify pathogens in metagenomic sequencing data. IDseq Portal accepts raw mNGS data, performs host and quality filtration steps, then executes assembly based alignment pipeline which results in assignment of reads and contigs to taxonomic categories.

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• SciCrunch
• 6 years ago - by Anonymous