Curator Dashboard

Cooled Focht Chamber System 2 designed for live cell imaging. Has same optical and specimen accommodations as standard FCS2 but is modified to include fluid ports in base to accommodate circulation of external refrigerant.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Database for meta analysis of prognostic value of genes from server at Kyushu Institute of Technology. Collection of publicly available cancer microarray datasets with clinical annotation, as well as tool for assessing biological relationship between gene expression and prognosis. Provides platform for evaluating potential tumor markers and therapeutic targets.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Database for meta analysis of prognostic value of genes from server at Kyushu Institute of Technology. Collection of publicly available cancer microarray datasets with clinical annotation, as well as tool for assessing biological relationship between gene expression and prognosis. Provides platform for evaluating potential tumor markers and therapeutic targets.

• Resource
• RRID-Legacy
• 6 years ago - submitted by HONG CHEN

Software tool set to assess quality of per read phasing information and help to reduce errors during this process.

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• SciCrunch
• 6 years ago - submitted by Sina Majidian

Software tool for automated acquisition of high resolution images from large areas.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Allison Schaser

Web server for comprehensive analysis of tumor infiltrating immune cells. Web tool for systematical analysis of immune infiltrates across diverse cancer types. Allows users to input function specific parameters, with resulting figures dynamically displayed to access tumor immunological, clinical, and genomic features.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Advanced Microscopy Facility is microscopy service and shared instrumentation facility in University of Virginia biomedical research community. Pprovides expertise and instrument access for electron and light microscopy imaging technologies as well as image analysis tools and services for basic scientists and clinical researchers within University of Virginia and across Commonwealth.

• Resource
• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Software molecular visualization application for Mac OS X operating system. Tool for chemists and molecular biologists used for handling small and large molecules, loading multiple molecules, moving and rotating them independently, or displaying molecular dynamics trajectory. Allows loading molecules using file formats: PDB, XYZ, MOL2, HIN, CAR, ALC, BIO.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Software R package to obtain estimated marginal means for linear, generalized linear, and mixed models. Compute contrasts or linear functions of EMMs, trends, and comparisons of slopes. Plots and other displays.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Kate Kennedy

Web tool for sharing and re-using biomodels, simulations, and visualizations of simulations results. Supports variety of modeling frameworks including kinetic, constraint based, and logical modeling, model formats including BNGL, CellML, SBML, and simulation tools including COPASI, libRoadRunner/tellurium, NFSim, VCell.

• Resource
• SciCrunch
• 6 years ago - by Anonymous

Open source Python codebase that provides real-time interface between open-hardware devices for electrophysiological recordings like EEG, EMG, and ECG, and analog and digital devices like MIDI, OSC, and analog synthesizers. This allows one to use electrical brain/body activity to flexibly control devices in real-time.

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• RRID-Legacy
• 6 years ago - submitted by Robert Oostenveld

Software Python package for annotating and counting genomic features in genomes and metagenomes. Software tools to facilitate annotation and comparison of genomes and metagenomes.

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• RRID-Legacy
• 6 years ago - submitted by Christopher Thornton

Software tool as deep learning framework based on variational autoencoder to impute missing values in transcriptome and methylome data analysis.

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• RRID-Legacy
• 6 years ago - submitted by Lina Qiu

Web tool for conserved domains searching within protein or coding nucleotide sequence.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web accessible database for visualizing and mining global yeast genetic interaction network. Allows users to easily access, visualize, explore, and functionally annotate genetic interactions, or to extract and reorganize sub networks, using data driven network layouts in intuitive and interactive manner. Used for storing and visualizing genetic interactions in S. cerevisiae.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

A multi-modal graph-based representation learning model that can integrate heterogeneous information including multiple types of interaction networks (sequence similarity network and protein-protein interaction network) and protein features (amino acid sequence, subcellular location and protein domains) to predict protein functions on Gene Ontology.

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• RRID-Legacy
• 6 years ago - submitted by Kunjie Fan

Software tool as graph based representation learning method for protein function prediction. Multi modal graph based representation learning model that can integrate heterogeneous information including multiple types of interaction networks including sequence similarity network and protein-protein interaction network, and protein features including amino acid sequence, sub cellular location and protein domains, to predict protein functions on Gene Ontology.

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• SciCrunch
• 6 years ago - submitted by Kunjie Fan

Software tool to processes big immunome data from raw sequences to quantitated clonotypes by MiLaboratory LLC. Universal software for analysis of T- and B-cell receptor repertoire high throughput sequencing data. Software for comprehensive adaptive immunity profiling.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Software tool as microscopy image file format converter by MBF Bioscience. Converts common microscopy image files to JPEG2000 and OME-TIFF. Used to view, analyze, and share big image data from many sources.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Maci Heal

Library with storage capacity of over million compounds possessing diversified structures. Coupled with this library will be advanced sample handling, information management and quality control systems. As important material and information resource, CNCL will work with both domestic and international stakeholders to promote sustained development of Chinese pharmaceutical industry.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous