Curator Dashboard

Driver system for electrode wires or linear electrode arrays. Microdrive system for extracellular recordings by Thomas RECORDING GmbH. Can be used with different conventional extracellular recording electrodes and preamplifier systems. MEM System is adapted to special requirements e.g. MEM holder is customized so that it fits to your stereotaxic instrument.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web tool for prediction of surface accessibility, secondary structure, disorder, and phi/psi dihedral angles of amino acids in amino acid sequence. Used to predict solvent accessibility, secondary structure, structural disorder, and backbone dihedral angles for each residue of input sequences.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web tool for prediction of allergens based on similarity of known epitope with any region of protein. Used for prediction of allergenic proteins and mapping of IgE epitopes.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web tool as sequence-based, alignment-free and pathogen-independent predictor of protein antigenicity.Predicts likelihood that protein is protective antigen. Integrated in SCRATCH suite of predictors.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web tool for secondary structure prediction. Used for network protein sequence analysis.

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• RRID-Legacy
• 6 years ago - by Anonymous

Computer algorithm for ab initio protein structure prediction and protein peptide folding, which aims to construct correct protein 3D model from amino acid sequence only. Server is suitable for proteins that do not have homologous templates in PDB library.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software R package to run minimum hypergeometric test.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web prediction tool for molecular binding in simulation of immune system. Agent based simulator of immune response that represents pathogens, as well as lymphocytes receptors, by means of their amino acid sequences and makes use of bioinformatics methods for T and B cell epitope prediction.Calculates immune response to generic pathogenic secondary structure. Allows users to submit antigen protein sequence and specify schedule of its injection as well as host haplotype.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software experimental data table management system to make research data accessible and available for reuse with minimal effort on part of data provider. Allows any scientist or data researcher to be able to explore dataset and then extract some or all of data according to their needs. Designed to manage experimental data tables in quick and easy way for users.

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• SciCrunch
• 6 years ago - submitted by Daniel Jacob

Provides data integrity using blockchain. Used for protecting integrity and provenance of research data.Open science chain utilizes distributed ledger technology (consortium blockchain) to securely store information about scientific data including its provenance to enable independent verification of its authenticity to establish trust in the research community.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web tool for prediction of protein sorting signals and localization sites in amino acid sequencies. Recommended for animal/yeast sequences. Analyzes input sequence by applying stored rules for various sequence features of known protein sorting signals to report possiblity for input protein to be localized at each candidate site with additional information.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software R package that predicts doublets in single cell RNA sequencing data. Doublet detection in single cell RNA sequencing data using artificial nearest neighbors. Identifies doublets using only gene expression data.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software object oriented discrete event simulation tool for complex, data driven modeling. Open source, Python based object oriented discrete event simulation tool that makes it easy to use large, heterogeneous datasets and high level data science tools such as NumPy, Scipy, pandas, and SQLAlchemy to build and simulate complex computational models.

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• SciCrunch
• 6 years ago - submitted by Jonathan Karr

Database, part of 3Rs Database Programme, provides overview of FCS free media for cell culture. Forum function for each record allows researchers to discuss applicability of each product. Database is offered by 3Rs-Centre ULS in collaboration with Animal Free Research UK.

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• dkNET
• 6 years ago - by Anonymous

Web application to generate random DNA sequences.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web application for combined transmembrane topology and signal peptide prediction. The predictor is based on a hidden Markov model (HMM) that models the different sequence regions of a signal peptide and the different regions of a transmembrane protein in a series of interconnected states.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software Python package to link Brain Imaging Data Structure and MNE-Python software for analyzing neurophysiology data with goal to make analyses faster to code, more robust to errors, and easily shareable with colleagues. Provides programmable interface for BIDS datasets in electrophysiology with MNE-Python. Used for organizing electrophysiological data into BIDS format and facilitating their analysis.

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• SciCrunch
• 6 years ago - by Anonymous

Software Java based suite of tools for creation, annotation and display of RNA secondary structure diagrams.Provides editing tools for easy modification of publication quality secondary diagrams that can be either drawn manually, or through automatic generation. Other features include grouping, numbering and structure annotation. Secondary structures may be saved in native format, or exported as postscript for printing and further manipulation in programs such as Adobe Illustrator.

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• RRID-Legacy
• 6 years ago - by Anonymous

Unified web framework for Rosetta applications. Web interface for selected Rosetta protocols. Web front end for Rosetta software suite. Provides common user interface for Rosetta protocols, stable application programming interface for developers to add additional protocols, flexible back-end to allow leveraging of computer cluster resources shared by Rosetta Commons member institutions, and centralized administration by Rosetta Commons to ensure continuous maintenance. Offers general and speedy paradigm for serverification of Rosetta applications. Lowers barriers to Rosetta use for broader biological community.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software system for solving protein structures using x-ray crystallographic data. Automatic molecular replacement pipeline for molecular replacement in CCP4. Integrates into one system all components necessary for solving crystal structure by Molecular Replacement. System is automated so that it needs no user intervention when running combination of jobs such as model searching, molecular replacement and refinement.

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• RRID-Legacy
• 6 years ago - submitted by YA-TING CHANG