Curator Dashboard

Software R package to build predictive signatures of microbial phenotypes. Software package implementing cluster lasso approach.

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• SciCrunch
• 6 years ago - by Anonymous

Software package to support parsing and extracting data from bibliometric datasets.

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• RRID-Legacy
• 6 years ago - by Anonymous

Image acquisition and analysis software suite for imaging applications. Hamamatsu Photonics imaging system for microscopy.

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• RRID-Legacy
• 6 years ago - by Anonymous

COVID-19 open access data and computational resources provided by federal agencies, including NIH, public consortia, and private entities. Continuously updated as more information becomes available. These resources are being shared for scientific and public health interests, and content is responsibility of resource organizers.

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• rapid-viraldb
• 6 years ago - submitted by Mia Jeffris

The aim of the COVID-19 Data Portal is to facilitate data sharing and analysis, and to accelerate coronavirus research. EMBL-EBI and partners have set up the COVID-19 Data Portal, which will bring together relevant datasets submitted to EMBL-EBI and other major centres for biomedical data. The aim is to facilitate data sharing and analysis, and to accelerate coronavirus research. The COVID-19 Data Portal will enable researchers to upload, access and analyse COVID-19 related reference data and specialist datasets. The COVID-19 Data Portal will be the primary entry point into the functions of a wider project, the European COVID-19 Data Platform.

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• rapid-viraldb
• 6 years ago - submitted by Mia Jeffris

Assisted model building with energy refinement parameter database. Family of force fields for molecular dynamics of biomolecules. Collection of equations and associated constants designed to reproduce molecular geometry and selected properties of tested structures.

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• RRID-Legacy
• 6 years ago - by Anonymous

Portal for Global Mouse Models for COVID-19 consortium. Presents consortium, its statement and membership, and URLs for mouse COVID-19 resources worldwide.

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• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Software tool as library of supporting code for numerical modelling (JSON config, HDF5 data, Modern OpenGL visualization). This code builds shared library called libmorphologica which contains simulation support facilities for our simulations of dynamical systems.

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• RRID-Legacy
• 6 years ago - submitted by Sebastian James

Library of containerized tools and workflow deployment system for enabling processing of large neuroimaging datasets. Provides canonical neuroimaging workflows specified in standard workflow language (CWL), integration with workflow execution engine (Airflow), imaging database (bossDB), and parameter database (Datajoint) to deploy workflows at scale, and tools to automate deployment and optimization of neuroimaging pipelines.

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• SciCrunch
• 6 years ago - by Anonymous

Software suite as collection of programs intended to assist with analyzing diffraction X-ray images. MuscleX diffraction X-ray image analyzing toolkit. Data reduction software for X-ray fiber diffraction data.

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• RRID-Legacy
• 6 years ago - by Anonymous

High content image acquisition instrument. Automatic cell imaging system designed for quantitative cellular analysis of fixed or live cells. Contains sCMOS camera that provides large field of view and high resolution image capture.

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• RRID-Legacy
• 6 years ago - by Anonymous

Harmony high content imaging and analysis software. Used to quantify complex cellular phenotypes. Designed for PerkinElmer high content screening systems.

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• RRID-Legacy
• 6 years ago - by Anonymous

Bench-top microwell plate based image cytometer for adherent and suspension cells.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web tool for computing metal ion concentrations in physiological solutions. Used for determining free metal concentration in presence of chelators or total metal given desired free concentration.

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• RRID-Legacy
• 6 years ago - by Anonymous

Collection of published mutations and sequence variations in genes that cause Neuronal Ceroid Lipofuscinoses together with unpublished data included with permission. There are two tables for each human NCL disease gene - Patient Datasheets list all published or reported patients and families, and Mutation Datasheets list all published or reported mutations, cross-referenced to patient table. Datasheets are available to view or download as excel files for off-site use to aid local needs or interests. Database follows mutation nomenclature recommendations of Human Genome Variation Society.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web tool as protein structure prediction service. Provides automated structure prediction and analysis tools that can be used to infer protein structural information from genomic data. Produces model for entire protein sequence in presence or absence of sequence homology to protein of known structure.

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• SciCrunch
• 6 years ago - by Anonymous

Web tool as high throughput protein structure prediction service. High throughput server for protein structure prediction.

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• SciCrunch
• 6 years ago - by Anonymous

Web server as integrated platform for automated protein structure and function prediction. Used for protein 3D structure prediction. Resource for automated protein structure prediction and structure-based function annotation.

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• SciCrunch
• 6 years ago - by Anonymous

Web application for data storage and analysis to explore brain tumors datasets from Chinese cohorts. Data portal for storage and interactive exploration of multi-dimensional functional genomic data that includes primary and recurrent glioma samples from Chinese cohorts. Allows users to browse DNA mutation profile, mRNA/microRNA expression profile and methylation profile, and to do correlation and survival analysis in specific glioma subtype.

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• RRID-Legacy
• 6 years ago - by Anonymous

Command line application for tandem repeats profiling from error prone long read sequencing data. Works on data from Oxford Nanopore Technologies and Pacific Biosciences sequencers. Used on whole genome alignments.

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• RRID-Legacy
• 6 years ago - submitted by Davide Bolognini