Curator Dashboard

Web tool for visualization of genome annotations across large phylogenetic trees.Used for visualization and exploration of functionally annotated microbial tree of life. Integrates taxonomic, phylogenetic and functional annotation data from bacterial and archaeal genomes.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software tool to make annotation of tandem repeats in amino acid and nucleic data simple. Includes modules for detecting tandem repeats with both de novo software and sequence profile HMMs. Used for statistical significance analysis of putative tandem repeats, and filtering of redundant predictions.

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• RRID-Legacy
• 6 years ago - submitted by Matteo Delucchi

Software package for display of light microscopy images together with atomic force microscopy images.

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• RRID-Legacy
• 6 years ago - submitted by Surya Aryal

Web tool for interactive Gene Ontology analysis of any biological data sources resulting in gene or protein lists.

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• SciCrunch
• 6 years ago - by Anonymous

Qiagen RT PCR cycler for performance in Real Time PCR. Enables streamlined analysis for wide range of applications.

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• RRID-Legacy
• 6 years ago - by Anonymous

Database for evolutionary biochemical studies of caspase functional divergence and ancestral sequence inference. Tool to rapidly disseminate organized caspase sequence data. Includes all animal species with currently available annotated genomes in NCBI genome database. Manually curated and not curated sequences are available to download.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software tool for assembly of DNA sequence alignment files in BioEdit fasta format into NEXUS format ready for analysis in programs such as PAUP or MrBayes. Used to calibrate gap in sequence after alignment.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web translational and research tool for DNA methylation based health profiling.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web tool for calculating DNA methylation based predictors of human traits and health.

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• RRID-Legacy
• 6 years ago - by Anonymous

Database provides information on research status of gene related diseases, gene expression in different tissues, regulatory relationship among genes, information of diseases, mRNA, Transcription Fctor, miRNA and other information shared among genes.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software tool for de novo detection of full length LTR retrotransposons in large sequence sets. Delivers high quality annotations based on known LTR transposon features like length, distance, and sequence motifs.

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• RRID-Legacy
• 6 years ago - submitted by John Hamilton

Software tool for parallelization of LTR_FINDER enabling rapid identification of long terminal repeat retrotransposons.

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• RRID-Legacy
• 6 years ago - submitted by John Hamilton

Software tool for efficiently solving large scale sequence matching tasks.

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• RRID-Legacy
• 6 years ago - submitted by John Hamilton

Open source software package developed in Python and JavaScript. Standalone and web application tool performing large genome alignments and generating interactive dot plots. Designed to compare two genomes. Used to sort query sequences along reference, zoom in plot and download several image, alignment or sequence files. Allows to display dot plots from other aligners by uploading their PAF or MAF alignment file.

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• RRID-Legacy
• 6 years ago - submitted by John Hamilton

Software tool to identify, orient and trim full length Nanopore cDNA reads. Able to rescue fused reads.

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• RRID-Legacy
• 6 years ago - submitted by John Hamilton

Open source software tool to manipulate files in GFF format. Used to convert, sort, filter, transform, or cluster genomic features.

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• RRID-Legacy
• 6 years ago - submitted by John Hamilton

Software tool as pipeline for accurate and automated gene prediction in novel eukaryotic genomes. Automated gene prediction training and gene prediction pipeline.BRAKER1 is eukaryotic genome annotation pipeline. BRAKER2 is extension of BRAKER1 which allows for fully automated training of gene prediction tools GeneMark EX R14, R15, R17, F1 and AUGUSTUS from RNA Seq and/or protein homology information, and that integrates extrinsic evidence from RNA-Seq and protein homology information into prediction.

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• RRID-Legacy
• 6 years ago - submitted by John Hamilton

Software tool to evaluate and visualize statistical significance of pairwise comparisons of IMGT clonotype (AA) diversity or expression, per variable,diversity, and joining gene of given IG or TR group, from NGS IMGT/HighV-QUEST statistical output. Antibody clonotype analysis based on NGS sequences.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software R pipeline to correlate drug distribution with tumor tissue types in mass spectrometry imaging data.

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• SciCrunch
• 6 years ago - submitted by mridula prasad

Software tool as machine learning system that automatically assesses bias in clinical trials. From PDF formatted trial report determines risks of bias for domains defined by Cochrane Risk of Bias (RoB) tool, and extracts supporting text for these judgments.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski