Curator Dashboard

Repository of sequenced antibodies, integrating curated information about antibody and its antigen with cross links to standardized databases of chemical and protein entities. Manually curated repository of sequenced antibodies, developed by Geneva Antibody Facility at University of Geneva, in collaboration with CALIPHO and Swiss Prot groups at SIB Swiss Institute of Bioinformatics. Database provides list of sequenced antibodies with their known targets. Each antibody is assigned unique ID number that can be used in academic publications to increase reproducibility of experiments.

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• rapid-viraldb
• 6 years ago - submitted by Mia Jeffris

Open platform that accepts data from peripheral nervous system data. It was previously the Blackfynn data platform. Pennsieve provides advanced functionality to organize files and complex metadata describing datasets and allows users to interact, search, and analyze these data through web application or programmatically using Python client. Provides end-to-end solution for publishing datasets through Pennsieve Discover, assigning DOIs and ensuring that published data becomes available to larger academic community in sustainable and FAIR manner.

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• RRID-Legacy
• 6 years ago - submitted by Gabrielle Pine

Software toolkit for visualizing multiscale anatomy schematics with phenotype related information. Used for visualisation of multiscale physiology circuitboards and to support clinical and scientific graphical user interfaces and dashboards for biomedical resource management and data analytics. Creates FAIR models of vascular and neural connectivity information for molecular, subcellular, cellular and tissue conduits across multiple scales. Provides interface between physiology knowledge and data relevant to physiology through intuitive graphical interface for managing semantic metadata and ontologies relevant to physiology. Brings together expertise in computer science, image processing, bioengineering and medicine to manage knowledge in physiology and pathology., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 6 years ago - submitted by Anita Bandrowski

Simulation platform that enables users to create, access, tune, and run models or computational algorithms through web based interface. Web interactive simulation platform that hosts SPARC computational models and solvers. Allows collaborative development and sharing, model coupling and cloud based execution, data visualization and analysis, and ensures sustainability of computational models developed within SPARC. Enables users to create predictive, multiscale, multi-physics models spanning from modulation sources acting on peripheral nervous system (PNS) to resulting modulation of organ functional response.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Software application intended to simplify dataset curation and submission process for SPARC investigators by providing one stop tool to accomplish all required steps. Desktop software to facilitate data organization and submission process for Stimulating Peripheral Activity to Relieve Conditions (SPARC) investigators and thus promote FAIR Data Principles. Git repository tool for SODA data deposition for SPARC researchers.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Project aim is to identify and validate novel targets in auto immune and inflammatory diseases. Used to create and profile target directed chemical and antibody probes in patient cell derived assays, provide biomarker and phenotypic read outs in more disease relevant context.

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• RRID-Legacy
• 6 years ago - by Anonymous

Shared facility provides space for culturing human induced plurupotent stem cells on second floor of Porter Biosciences. Provides biosafety cabinets,CO2 and variable oxygen control incubators, inverted phase contrast microscopes, and sterile dissection hood equipped with dissecting microscope and heated stage,inverted fluorescence microscopes with live-cell time-lapse capabilities, centrifuges, liquid nitrogen cryostorage space, refrigerators, freezers, water baths, dedicated bioengineering space, and viral expression core. Routine mycoplasma testing is performed in-house and karyotyping services are carried out via contract.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Provides access to instruments and training. Instruments including Dell Precision 7910 Analysis PC,Leica DMRXA Upright Widefield Microscope, Nikon E600 Upright Widefield Microscope, Nikon N-SIM structured illumination super-resolution and A1 laser scanning confocal microscope, Nikon Inverted Spinning Disk Confocal Microscope, Zeiss 510 Laser Scanning Confocal Microscope.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Offers analytical and instructional expertise in mass spectrometry with practical training and access to instrumentation.Located in room C1B90 of Jennie Smoly Caruthers Biotechnology Building houses six mass spectrometry systems.Instruments are interfaced with chromatographic system in order to separate complex mixture samples. Offers training for open access to some instruments including Thermo ISO LT GCMS, Synapt G2 HDMS, Agilent 6120 LCMS, and 4000 Q-trap QQQ instruments.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Core provides access to instruments including:FEI Tecnai 12 Spirit TEM, FEI Tecnai F20 (200kV) FEG-TEM 200kV FEG-TEM,Gatan US4000 4k x 4k CCD, bottom-mount,CryoTEM and electron tomography,High-resolution TEM;FEI Tecnai F20 (200kV) FEG-TEM,300kV FEG-TEM,Gatan US4000 4k x 4k CCD, bottom-mount,CryoTEM and electron tomography,High-resolution TEM,FEI/Phillips CM100 (100kV) TEM,100kV, tungsten TEM,2k x 2k AMT CCD, bottom-mount.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Magnetic resonance imaging research facility. Provides Tesla Siemens MAGNETOM Prismafit MRI scanner, located at Center for Innovation and Creativity (CINC) on CU Boulder campus.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Core provides help to efficiently use of resources by involving individual laboratory members in identifying opportunities for efficiency in their laboratory and promoting efficient behaviors, upgrading inefficient laboratory equipment and techniques, compelling labs to use lab space, fume hoods, and lab equipment resources efficiently and in collaborative manner, developing means to reduce large flow of lab materials into waste stream, promoting green chemistry and chemical re-use where feasible.Core provides instruments including Shared Stirling Ultracold Ultra Low Temperature Freezer and Shared Thermo Scientific Ultracold Ultra Low Temperature Freezer.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Provides investigators within the Department a user-friendly, shared environment where researchers can advance discovery in diverse areas such as cancer biology, drug discovery, nanomaterial analysis and basic life science. Provides Biosafety Cabinets, CO2 Incubators including viral and variable oxygen (tri-gas) Insect cell incubator and shaker, Large-scale mammalian incubator, Routine mycoplasma testing,FBS testing,Training, In-house media preparation.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Provides centrally managed experimental testing facility offering geotechnical centrifuge, structural dynamics and materials testing. Facility boasts unique large-scale, fast loading rate, gravitational and environmental control capabilities.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Provides access to multitude of instruments and techniques, including EPR, CD and fluorescence spectroscopy, DLS, Sec-MALS, ITC, MST, stopped-flow spectroscopy, chemical quench-flow, imaging systems, centrifuges, scintillation counters, sonicators and more.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Multidisciplinary core research facility and service center, within College of Engineering and Applied Science, that provides access to equipment in areas of micro and nanofabrication, nanomaterials characterization and metrology and offers expertise and advanced hands-on training. Offers common platform for convergence of multiple scientific and engineering disciplines and facilitates collaborative research with strategic partners and information exchange.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Core provides number of specialized measuring tools for optical and surface characterization, as well as expertise in fiber optics.Fabrication facility is clean room for fabrication at micron and nanometer scale. Training and consultation is provided.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Software R package for flexibly restructuring and aggregating data.

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• RRID-Legacy
• 6 years ago - by Anonymous

Laboratory portal about research including new approaches for precision gene editing, delivery of molecular and genetic cargo, discovery of novel programmable systems, and engineering of immune system to develop next generation of therapeutics. Provides collection of tools for guide design.CRISPR.MIT.EDU of Guide Design Tools is no longer available, documented on August 28,2020.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web tool for browsing genome wide fitness experiments for diverse bacteria from Deutschbauer lab, the Arkin lab, and collaborators. Collection of mutant phenotypes for bacterial genes of unknown function.

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• RRID-Legacy
• 6 years ago - by Anonymous