Curator Dashboard

Open source software tool for reproducible analysis and visualization of intracranial EEG data. Used for analysis of intracranial electroencephalogram data, including data collected using strips and grids (electrocorticography, ECoG) and depth electrodes (stereotactic EEG).

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• RRID-Legacy
• 6 years ago - submitted by John Magnotti

Software tool as SVM based method for prediction of functional proteins of gram negative bacteria using amino acid patterns and composition. Webserver for functional classification of proteins of bacteria into virulence factors, information molecule, cellular process and metabolism molecule.

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• RRID-Legacy
• 6 years ago - by Anonymous

Open source cloud based pipeline and analysis service for metagenomic pathogen detection and monitoring. Hypothesis free global software platform that helps scientists identify pathogens in metagenomic sequencing data. IDseq Portal accepts raw mNGS data, performs host and quality filtration steps, then executes assembly based alignment pipeline which results in assignment of reads and contigs to taxonomic categories.

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• SciCrunch
• 6 years ago - by Anonymous

Instrument for imaging and analyzing gels and western blots by Bio Rad. Designed to address multiplex fluorescent western blotting, chemiluminescence detection, general gel documentation applications, and stain-free technology imaging needs.

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• RRID-Legacy
• 6 years ago - submitted by Raghava Jagadeesh

Transfer cell allows fast, efficient, economical blotting without a buffer tank or gel cassettes.

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• RRID-Legacy
• 6 years ago - submitted by Raghava Jagadeesh

Software tool as collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Software package that provides set of tools for analysis of CLIP data starting from raw reads generated by sequencer.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Tecan Infinite M200 Pro is multi-detection microplate reader used for biological applications including protein quantification, ELISA, binding studies, DNA quantification, gene expression, immunoassays, toxicity, cell viability, RNA quantification, cell-based and enzyme assays.This modular Tecan plate reader is monochromator based system, with no need for filters, giving range from 230-1000 nm Abs or 300-600nm FI in 1 nm steps. With spectrally enhanced, red-sensitive PMT, the FI range extends to 330-850nm for NIR readings. Modules featured can be Monochromator absorbance, fluorescence top, fluorescence bottom, Luminescence, Incubation, injection, and enhanced photomultiplier tube (PMT) for red sensitivity that brings the detection limit to 45 pM. Please see individual SKU numbers for a list of installed modules. Heating module that’s installed on the microplate reader, allows for the chamber to keep at 37°C for those temperature sensitive samples. Can read microplates from 6 up to 384 well plates, along with PCR plates. Tecan M200 Microplate Reader is driven by Magellan software, which allows you to easily navigate run from start to finish. The user can choose from predetermined assays or build their own from scratch.

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• RRID-Legacy
• 6 years ago - submitted by Raghava Jagadeesh

Core offers light microscopy instruments, image analysis tools, consultations and training. Platform for imaging by microscopy.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Facility dedicated to high resolution electron cryomicroscopy and electron cryotomography. It houses three electron microscopes,120kV Spirit, 200kV F20, and 300kV Titan Krios. These microscopes are available to researchers either for direct use, or aided by MEMC personnel, to collect data aimed at high resolution structural biology projects.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Software Python package and command line tool for graphs analysis. Used to search for important components of graphs. Implements and provides ancillary methods for community finding, set operations between graphs, and quick data type conversion tools.

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• SciCrunch
• 6 years ago - submitted by Tommaso Mazza

Software Matlab toolbox to perform representational similarity analysis for neural data.

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• SciCrunch
• 6 years ago - by Anonymous

Peristaltic pump with flow rate 0.06 to 3400 mL/min, three digit LED display, reversible motor, LED indicators to confirm motor direction and speed range from 6 to 600 rpm.

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• RRID-Legacy
• 6 years ago - submitted by Raghava Jagadeesh

Core provides help to efficiently use of resources by involving individual laboratory members in identifying opportunities for efficiency in their laboratory and promoting efficient behaviors, upgrading inefficient laboratory equipment and techniques, compelling labs to use lab space, fume hoods, and lab equipment resources efficiently and in collaborative manner, developing means to reduce large flow of lab materials into waste stream, promoting green chemistry and chemical re-use where feasible.

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• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Software tool used for setting up PyroScience FireStingO2 (FSO2-4) oxygen meter and calibrating sensors. Measured values are displayed numerically and graphically and can be logged in respective data files for further data processing.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web interfaced application to store, share, explore and manipulate metagenomic data. Interactive viral and microbial metagenomic data manager. Stores large volumes of user defined sample, sequence and assignment information while providing filtering web interface. Offers means to share datasets with collaborators, BLAST external sequences against them, and confirm assignments by running phylogenetic placement. Available as set of Docker containers that make it simple to deploy on various infrastructures.

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• SciCrunch
• 6 years ago - submitted by Guilhem Sempéré

Web server for simple multiple sequence alignment. Can align protein, DNA and RNA sequences.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web server for prediction of mitochondrial targeting sequences.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web server predicts presence of N-terminal presequences: signal peptide (SP), mitochondrial transit peptide (mTP), chloroplast transit peptide (cTP) or thylakoid luminal transit peptide (luTP). Predicts potential cleavage site for sequences predicted to contain N-terminal presequence.

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• RRID-Legacy
• 6 years ago - by Anonymous

Core provides centralized resource working to take difficulty out of Next Generation Sequencing projects for both novice and experienced users alike. Provides assistance in all facets of experimentation from design to data analysis including grant and manuscript preparations.Offers NGS, Sanger, Informatics and Genotyping services based off of Illumina platform.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth