Curator Dashboard

Core offers bioinformatics consulting and data analysis services to help researchers analyze and understand large data sets acquired from next generation sequencing and array based technologies.Bioinformatics staff members have extensive experience in bioinformatics, genomics, transcriptomics and translational informatics in plant, animal and microbial systems. Expertise includes big data analysis, statistical analysis, software development and high performance computing.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Cytometry core offers project consulting, experimental design and optimization as well as data analysis services. Provides tools and staff expertise for both live and fixed cell analysis. Provides FACS ARIA and SONY SH800 sorters to help users sort cells of interest. Offers microscopes for self service users. Microscope brands include Leica SP5 Confocal, Nikon Multiphoton Confocal system, Nikon Live cell Imaging platform, Olympus spinning Disk Confocal instruments, Keyence BZX800.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Core provides services in bioimaging and high throughput screening, structural biology, mass spectrometry, biomolecular analytics, cell biology and genomics.

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• RRID-Legacy
• 6 years ago - by Anonymous

Human Albumin ELISA kit (ab108788) is a sandwich ELISA kit designed for the quantitative measurement of albumin levels in urine, saliva, milk, cerebrospinal fluids and cell culture samples.

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• RRID-Legacy
• 6 years ago - submitted by Julio Aleman

Interactive database of software tools for analysis of long read sequencing data.Catalogue of long-read sequencing data analysis tools. Catalogue of downstream analysis tools of real and synthetic long-read technologies.

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• RRID-Legacy
• 6 years ago - by Anonymous

Advanced imaging facility providing various imaging techniques in microscopy. Focus is on techniques, instrumentation and know-how in electron and light microscopy including preparation.

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• RRID-Legacy
• 6 years ago - submitted by Urs Ziegler

Software tool as implementation of network based statistics toolbox in R. Includes mixed effects models.

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• RRID-Legacy
• 6 years ago - by Anonymous

AmpliconTagger is a rRNA marker gene amplicon pipeline coded in a python framework that enables fine tuning and integration of virtually any potential rRNA gene amplicon bioinformatic procedure. It is designed to work within an HPC environment, supporting a complex network of job-dependencies with a smart-restart mechanism in case of job failure or parameter modifications.

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• SciCrunch
• 6 years ago - submitted by Julien Tremblay

Software tool as rRNA marker gene amplicon pipeline coded in python framework that enables fine tuning and integration of virtually any potential rRNA gene amplicon bioinformatic procedure. Designed to work within HPC environment, supporting complex network of job dependencies with smart restart mechanism in case of job failure or parameter modifications.

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• SciCrunch
• 6 years ago - submitted by Julien Tremblay

Web tool as collection of containerized biosimulation tools that provide consistent interfaces and guide to choosing simulator. Helps to find simulation tools that have capabilities, including supported modeling frameworks, simulation algorithms, and modeling formats, needed for specific modeling projects.

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• SciCrunch
• 6 years ago - by Anonymous

Web tool for executing broad range of modeling studies and visualizing their results. Provides web interface for reusing any model. Models, simulations, and visualizations are available under licenses specified for each resource.

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• SciCrunch
• 6 years ago - by Anonymous

Company provides analytics software tools for mass spectrometry. Proteomics and metabolomics software tools for mass spectrometry analysis.

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• RRID-Legacy
• 6 years ago - by Anonymous

Provides data analysis software for spectroscopy and imaging. Includes FRETmatrix software, a|e software, DecayFit software and AniFit software.

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• RRID-Legacy
• 6 years ago - by Anonymous

Shared knowledgebase of VA EHR-based phenotype algorithms, definitions and data curation metadata.

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• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Web service of Inter-university Consortium for Political and Social Research. Self-publishing repository for social, behavioral, and health sciences research data. Used for deposit of replication data sets for researchers who need to publish their raw data associated with journal article so that other researchers can replicate their findings.

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• dkNET
• 6 years ago - submitted by Ko-Wei Lin

Repository for data examining social, behavioral, public health, and economic impact of novel coronavirus global pandemic. Free self publishing option for any researcher who wants to share data related to COVID-19. Deposits should include all data, annotated program code, command files, and documentation necessary to understand data collection and/or replicate research findings.

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• dkNET
• 6 years ago - submitted by Ko-Wei Lin

Software R package for identification of differential translation from Ribo-seq data. Computational tool for mapping genome wide differences in translation efficiency.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software R package to create and use Ensembl based annotation resources.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web tool to choose representative subsets of data for use with replicates or groups of different sample sizes. Used to retain distribution information at single datum level and may be considered for standardized use in fair publishing practices.

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• SciCrunch
• 6 years ago - by Anonymous

Web tool to graph all copy number alterations present in segment file. Custom data is permitted. Allows to display copy number alterations which overlap user specified region, to quantify number of amplified CNAs and deleted CNAs. Visualization tool to explore copy number alterations discovered in published cancer datasets. Intended to help oncology community observe of relative rates of amplification, deletion, and mutation of interesting genes and regions.

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• SciCrunch
• 6 years ago - by Anonymous