Curator Dashboard

Software tool as whole slide viewer for slides scanned with Vectra Polaris and Vectra 3.

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• RRID-Legacy
• 6 years ago - by Anonymous

Portal as central source of Australian open government data. Used to find, explore and reuse Australia public data. Anyone can access the anonymised public data published by federal, state and local government agencies, publicly funded research data and datasets from private institutions that are in public interest.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software tool for rapid high resolution structure determination from ideal protein fragments. Pipeline to determine crystal structures using molecular replacement with small fragments followed by density modification. It is available through CCP4.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software for acquisition, deconvolution, processing, analysis, and display of DeltaVision images. Used in DeltaVision OMX SR imaging system., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software tool as whole slide viewer for slides scanned with Vectra Polaris and Vectra 3 ., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Automated image analysis software package for accurately visualizing and quantifying biomarkers in tissue sections. Designed to meet workflow and throughput needs of research pathology, oncology, immunology. Used for tissue analysis., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

EFurther details are available in Okatan (2018a, 2018b) and Okatan and Kocatürk (2017). Background Extracellular recording of neural activity using microelectrode arrays is widely used in neuroscience research and invasive brain-computer interfaces. For detection of action potentials, or spikes, raw recordings are bandpass filtered and are often thresholded using an amplitude threshold. Computation of an optimal threshold is an active research area. ‘Truncation thresholds’ are a pair of amplitude thresholds that are computed in an entirely automatic and data-driven manner for spike detection in filtered extracellular neural recordings (Okatan and Kocatürk, 2017). The software that computes them, the ‘Truncation Thresholds Software’, is registered with SciCrunch.org under RRID:SCR_014637. Filtered recordings are widely accepted to consist of spikes and background noise. The maximum likelihood estimate of the standard deviation of the background noise is estimated by the Truncation Thresholds Software as a byproduct of the computation of the truncation thresholds. This estimate has been shown to be more accurate than the estimates obtained using seven other methods (Okatan, 2018a, 2018b). This result was demonstrated using simulated extracellular recording data. Here, the simulated data of Okatan (2018a, 2018b) are shared to stimulate further research in the development of new and more accurate estimators of the noise standard deviation. References M. Okatan, M. Kocatürk, (2017), Truncation thresholds: a pair of spike detection thresholds computed using truncated probability distributions . Turkish Journal of Electrical Engineering and Computer Science, 25 (2), 1436-1447. doi:10.3906/elk-1603-33. M. Okatan, (2018a), "Comparison of truncation thresholds with four different robust scale estimators," 26th Signal Processing and Communications Applications Conference (SIU), Izmir, 2018, pp. 1-4, doi: 10.1109/SIU.2018.8404387. M. Okatan, (2018b), "A comparative study on the estimation of noise standard deviation using DATE and truncation thresholds," 2018 26th Signal Processing and Communications Applications Conference (SIU), Izmir, 2018, pp. 1-4, doi: 10.1109/SIU.2018.8404155.

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• NIF
• 6 years ago - submitted by Murat Okatan

Multidisciplinary in vivo core facility equipped with equipment for detailed behavioral analyses and surgical procedures in context of mouse and rat models of neurological, cognitive and psychiatric disorders.Services include Behavioral analyses, Cognitive function,learning and memory, Sensory motor function, Emotional function and social interactions,Pain sensitivity tests, Disease models, Viral gene delivery, stereotactic and surgical manipulations, Optogenetics, In vivo electrophysiology.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Core provides platforms including Illumina NextSeq500 and MiSeq, HiSeq3000 and Pacific Biosciences SEQUEL system. Offers free consultation in sequencing technologies including read length, error rate, predominant type of error, data output/run, speed, cost. Services include de novo sequencing of whole genomes, targeted sequencing, transcriptome sequencing, chromatin immunoprecipitation sequencing, methylation analysis and metagenomics.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Provides service and training in proteomics and mass spectrometry. Services in proteomics, differential proteomics, two dimensional difference gel electrophoresis, isobaric tags for relative and absolute quantitation, tandem mass tags, iodoTMT, stable isotope labeling with amino acids in cell culture, quantification of proteins by label-free LC-MS/MS, and analysis of protein post translational modifications and molecular weight determination. Core offers education, consultation, data processing and reporting, and support of grant application.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Brings together Centers for Disease Control and Prevention, National Institutes of Health, Robert Wood Johnson Foundation, and U.S. Department of Agriculture to accelerate progress in reducing childhood obesity in America, to manage projects and reach common goals, to coordinate funding to make the most of available resources, to share insights and expertise to strengthen research. NCCOR focuses on efforts that have to benefit children, teens, and their families, and communities in which they live.

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• dkNET
• 6 years ago - submitted by Ko-Wei Lin

Software tool as snakemake implementation of DADA2 to process amplicon sequencing data for microbial ecology.

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• SciCrunch
• 6 years ago - by Anonymous

Software package for large scale genomic DNA methylation analysis. Filters and processes aligned bisulphite sequenced data to generate comprehensive reference methylomes in different units for any genome. Processes aligned SAM files of multiple samples to provide reliable and statistically significant differentially methylated regions, then relate them to proximal genes and CpG features with reasonable rapidity.

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• RRID-Legacy
• 6 years ago - by Anonymous

Core develops new mouse monoclonal antibodies for investigators to use in basic and applied research.Provided services include immunization of mice, cell fusion, cell cloning, screening by ELISA and Western blot, monoclonal antibody production, purification and labeling, monoclonal antibody analyses such as antibody/antigen affinity measurements, epitope binning and identification of matched antibody pairs. Customer training on select self-service instruments is also offered.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

ICBR Electron Microscopy supports researchers in visualizing microscopic structures through imaging projects and user training. Provided serives include room temperature and cryo transmission and scanning electron microscopy, confocal laser scanning microscopy, sample preparation and user training.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Core provides services and consultation on Single Cell RNA-Seq, RNA-Seq, 16s metagenomics and Affymetrix gene expression arrays. High-throughput RNA-seq libraries, 16s libraries and sequencing capture libraries can be done by using Agilent Bravo robot. QuantiGene RNA Assays measure up to 80 gene targets directly with degraded and cross-linked RNA in FFPE tissues and blood, with no RNA purification required.BioRad QX200 AutoDG Droplet Digital PCR System provides absolute quantification of target DNA or RNA molecules with greater precision and sensitivity than qPCR, sensitivity off ddPCR System can facilitate expanded analysis of single cells. Genotyping services include fragment analysis using AB3730, 96 capillary technology, development of microsatellite libraries using Illumina sequence data, and genotyping using mouse tails or ear punches.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Portal about prospective investigations into risk factors for major chronic diseases in women. Nurses were selected as study population because of their knowledge about health and their ability to provide complete and accurate information regarding various diseases, due to their nursing education.The largest longitudinal study of women. Started in 1976, involving 275000 participants.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Electronic database that tracks controlled substance prescriptions in state. PDMPs can provide health authorities timely information about prescribing and patient behaviors that contribute to epidemic and facilitate nimble and targeted response. This public tool is used for drug overdose monitoring from Centers for Disease Control and Prevention.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Mobile genome analysis application, with capabilities to align reads, call variants, and visualize results entirely on iOS device. Optimized to run in mobile environment and has performance comparable to popular desktop genomics software.

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• SciCrunch
• 6 years ago - by Anonymous

Core provides facilities including cell analysis and imaging, genomics and bioinformatics, proteins and diagnostics. Services include experimental design advice, sample preparation,data generation,data analysis.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth