Curator Dashboard

Confocal microscope by Leica Microsystems to capture up to five true color channels simultaneously at high speed without need for trade-offs in multicolor experiments. Provides super resolution live cell imaging, simultaneous multicolor imaging, live specimen imaging thanks to fast acquisition rates, sample protection thanks to low phototoxicity.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Software package for estimating and analyzing RNA velocities in single cells using dynamical modeling. RNA Velocity using dynamical modeling.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Software package for analysis of expression dynamics in single cell RNA seq data. Enables estimations of RNA velocities of single cells by distinguishing unspliced and spliced mRNAs in standard single-cell RNA sequencing protocols. Estimates RNA velocity in single cell RNA sequencing datasets. RNA velocity estimation in Python or R.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Software plugin for bone image analysis in ImageJ. Used for standard bone measurements. Provides free, open source tools for trabecular geometry and whole bone shape analysis.

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• RRID-Legacy
• 7 years ago - by Anonymous

Collection of genes encoding proteins with strong support of mitochondrial localization. Inventory of genes encoding mitochondrial-localized proteins and their expression across 14 mouse tissues. Database is based on human and mouse RefSeq proteins that are mapped to NCBI Gene loci. MitoCarta 2.0 inventory provides molecular framework for system-level analysis of mammalian mitochondria.

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• RRID-Legacy
• 7 years ago - by Anonymous

Portal enabling web based visualization and analysis of multi omic data describing cell types in developing and adult brain, powered by gEAR and EpiViz. Release 1 on April 2019 includes single cell and bulk tissue RNAseq, ATACseq, and ChIPseq from fetal human prefrontal cortex, as well as from stem cell models of neural induction. Portal will expand to include multiple regions of developing and adult brain and additional analytical tools.

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• dkNET
• 7 years ago - submitted by Maryann Martone

Software used to analyze images obtained from microscope. ZEN Black is software Zeiss uses to run their laser-based instruments.

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• RRID-Legacy
• 7 years ago - by Anonymous

Web based analytics environment for genomic data arising from BRAIN Initiative Cell Census Network, based on AnnoJ browser. AnnoJ browser displays epigenomic data, including base resolution DNA methylation, RNA-Seq, ChIP-Seq, as well as annotations.

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• dkNET
• 7 years ago - submitted by Maryann Martone

Web tool as multiple sequence and structure alignment server. Automatically identifies homologs with known 3D structures for input sequences, derives structural constraints through structure based alignments and combines them with sequence constraints to construct consistency based multiple sequence alignments. Aligns sequences of multiple input structures, with output representing multiple structure based alignment refined in combination with sequence constraints.

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• RRID-Legacy
• 7 years ago - by Anonymous

Web tool to convert genome coordinates and genome annotation files between assemblies. Used to translate genomic coordinates from one assembly version into another and retrieves putative orthologous regions in other species using UCSC chained and netted alignments.

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• SciCrunch
• 7 years ago - by Anonymous

Web tool to show micro homology sequences striding over double strand break point created by CRISPR/Cas9 system. Used to search for CRISPR target site with micro-homology sequences. Used to predict deletion pattern.

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• RRID-Legacy
• 7 years ago - by Anonymous

Python implementation of conditional expectation maximization algorithm that estimates epigenetic landscapes and state of individuals and may be used to study nonlinear epigenetic aging. Fast conditional expectation maximization algorithm used to model epigenetic states associated with phenotype of interest. Can model non linear epigenetic trait associations directly without transformation of phenotype of interest.

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• SciCrunch
• 7 years ago - submitted by Colin Farrell

Web medaka pattern match tool for short sequence and/or pattern. Used to search database of medaka genome on target and off target sites when editing genome with CRISRP-Cas9.

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• RRID-Legacy
• 7 years ago - by Anonymous

Modular light sheet illumination system designed to image living samples with minimal photobleaching or phototoxicity by Mizar Imaging. Enables high spatial and temporal resolution light sheet imaging to be added to existing or new microscope system.

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• SciCrunch
• 7 years ago - submitted by Leah Booher

Singulator to automate tissue preparation for single cell and single nucleus analyses. Bench top Singulator System and single use cartridge enable tissue dissociations into singulated cells or nuclei suspensions.

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• SciCrunch
• 7 years ago - submitted by Leah Booher

Automated, microfluidic droplet based platform for single cell research that encapsulates up to 8 samples. Instrument has sample temperature control from 4 degrees Celsius to 40 degrees Celsius. System detects single use cartridges for specific applications.

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• SciCrunch
• 7 years ago - submitted by Leah Booher

Processor for auditory research delivers processing power, data transfer and sample rate of 200 kHz by Tucker-Davis Technologies . Can be equipped with up to 4 high-performance DSPs to support complex stimulus control, high frequency applications, and real time normalization for speakers and microphones.

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• RRID-Legacy
• 7 years ago - by Anonymous

Intracellular microinjection dispense system by Parker Hannifin. Supplies repeatable pressure pulses. Designed for rapid and reproducible ejections of picoliter and nanoliter volumes used in conjunction with intracellular or extracellular studies while avoiding inherent desensitization of nerve cells which accompanies Iontophoretic methodology. System comes complete with high speed valves and necessary tubing assemblies.

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• RRID-Legacy
• 7 years ago - by Anonymous

Database lists names of prokaryotes that have been validly published in International Journal of Systematic and Evolutionary Microbiology directly or by inclusion in Validation List, under Rules of International Code of Nomenclature of Bacteria. Has classification of prokaryotes and information on prokaryotic nomenclature and culture collections.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool as Microsoft Excel spreadsheet calculator designed to estimate epidemiological cutoff values (ECVs, ECOFFs) for minimal inhibitory concentrations or minimal effective concentrations of wild-type bacterial or fungal populations.

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• RRID-Legacy
• 7 years ago - by Anonymous