Curator Dashboard

Culture chamber for cell culture by BioSpherix. Functionalized by gas controllers for all bioactive gases, e.g. O2, CO2, CO, NO, etc. Made of clear polycarbonate. Magnetic seal door. Temperature is controlled. Combines with ProOx 110, ProCO2, ProOx C21, OxyCycler Series.

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• RRID-Legacy
• 7 years ago - submitted by Edyta Vieth

Software package for motion capture analysis by Innovision Systems Inc.

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• RRID-Legacy
• 7 years ago - by Anonymous

List of proteins commonly found in proteomics experiments that are present either by accident or through unavoidable contamination of protein samples. List is based on analysis of current version of GPMDB, as well as suggestions by users. Current version of cRAP in FASTA format can be obtained from the GPM FTP site.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software for designing CRISPR/Cas guide RNA with reduced off target sites. Used for rational design of CRISPR/Cas target. Web server for selecting rational CRISPR/Cas targets from input sequence. Server currently incorporates genomic sequences of human, mouse, rat, marmoset, pig, chicken, frog, zebrafish, Ciona, fruit fly, silkworm, Caenorhabditis elegans, Arabidopsis, rice, Sorghum and budding yeast.

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• RRID-Legacy
• 7 years ago - by Anonymous

Web tool as probabilistic approach to visualizing protein or nucleic acid sequence motifs. Used for motif visualization in which residue heights are scaled relative to their statistical significance. Supports real time conditional probability calculations and visualizations.

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• RRID-Legacy
• 7 years ago - by Anonymous

Web tool for calculating number of cells that must be sampled in order to see at least n cells of each type for single cell genomics experiments.

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• dkNET
• 7 years ago - submitted by Maryann Martone

Software tool as code for processing and analyzing data in Allen Brain Atlas. Source code for reading and processing Allen Brain Atlas data. Allen SDK focuses on Allen Brain Observatory, Cell Types Database, and Mouse Brain Connectivity Atlas.

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• NIF
• 7 years ago - submitted by Maryann Martone

Web server for quantitative prediction of peptide binding to any MHC molecule of known sequence using artificial neural networks. Characterizes binding specificity of given major histocompatibility complex molecule and predicts peptide length profile and peptide binding affinity. NetMHCpan 3.0 is improved prediction of binding to MHC class I molecules integrating information from multiple receptor and peptide length data sets. NetMHCpan 4.0 is trained on naturally eluted ligands and on peptide binding affinity data. NetMHCpan-4.1 server predicts binding of peptides to any MHC molecule of known sequence using artificial neural networks (ANNs).

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• RRID-Legacy
• 7 years ago - by Anonymous

Software R package for mapping quantitative trait loci with high dimensional data and multiparent populations. Used for analysis of high dimensional data and complex crosses. Interactive software environment for mapping quantitative trait loci in experimental populations.R/qtl2 software expands scope of R/qtl software package to include multiparent populations derived from more than two founder strains, such as Collaborative Cross and Diversity Outbred mice, heterogeneous stocks, and MAGIC plant populations.

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• RRID-Legacy
• 7 years ago - submitted by Jason Bubier

Database provides access to genotype and phenotype data from experiments with Diversity Outbred mice. Data can be searched by publication, investigator, and data type and can be downloaded in zipped CSV or R/QTL2 formats. Users can download full studies or subset of samples, genotypes, clinical phenotypes and molecular phenotypes including transcript, proteomic, and metabolomic profiling data.

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• RRID-Legacy
• 7 years ago - submitted by Jason Bubier

Software tool as algorithm that represents nodes as vectors by integrating bioentity attribute such as RNA sequence and bioentity behavior that is relationship between bioentities.

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• SciCrunch
• 7 years ago - submitted by Zhen-Hao Guo

Pipeline for analyzing and identificantion of chromatin loops in CHi-C promoters data. Used to capture Hi-C visualization and interaction calling.

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• SciCrunch
• 7 years ago - submitted by Thomas Sexton

Web Shiny-based server framework for retrieving, analyzing and visualizing large genomic variations data.

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• SciCrunch
• 7 years ago - submitted by Wenxi Wang

Software command line tool for performing direct coupling analysis of aligned categorical datasets. Used for analysis at scale of pan genomes of many bacteria. Incorporates correction for population structure, which adjusts for phylogenetic signal in data without requiring explicit phylogenetic tree.

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• RRID-Legacy
• 7 years ago - submitted by Chao Yang

Software tool for global direct coupling analysis of input genome alignments. Implements variant of pseudolikelihood maximization direct coupling analysis, with emphasis on optimizations that enable its use on genome scale. May be used to discover co evolving pairs of loci.Used for genome wide epistasis analysis.

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• RRID-Legacy
• 7 years ago - submitted by Chao Yang

Web tool for display, annotation and management of phylogenetic trees. Accessible with any modern web browser.

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• RRID-Legacy
• 7 years ago - submitted by Chao Yang

Software package to build, manipulate and display phylogenetic trees. Designed for building gene trees with known species tree and is highly efficient and accurate.

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• RRID-Legacy
• 7 years ago - submitted by Chao Yang

Software tool for rapid large scale prokaryote pan genome analysis. Builds large scale pan genomes, identifying core and accessory genes. Makes construction of pan genome of thousands of prokaryote samples on standard desktop without compromising on accuracy of results. Not intended for meta genomics or for comparing extremely diverse sets of genomes.

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• RRID-Legacy
• 7 years ago - submitted by Chao Yang

Software package as system for rapidly aligning entire genomes. Alignment tool for DNA and protein sequences. Can align incomplete genomes.

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• RRID-Legacy
• 7 years ago - submitted by Chao Yang

Software tool as algorithm for identifying population structure using dense sequencing data. Can perform model based Bayesian clustering on large datasets, including full resequencing data.

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• RRID-Legacy
• 7 years ago - submitted by Chao Yang