Curator Dashboard

Collection of mutation data in cancer, with focus on copy number abnormalities for all types of human malignancies.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Software tool suite to analyze RNA-RNA interactome experimental data such as CLASH, CLEAR-CLIP, PARIS, SPLASH, etc.

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• RRID-Legacy
• 6 years ago - submitted by Pavankumar Videm

Canadian data repositories project. Data submitted to FRDR is housed on Compute Canada managed infrastructure at University of Victoria, BC or at University of Waterloo, ON. Research data submitted to FRDR does not leave Canada.Most of metadata is shared with Globus, running on Amazon Web Services in the USA, to be indexed and made available for discovering datasets. Certain metadata fields, for example, submitter contact information, are not shared with Globus.Larger uploads are made using Globus, only public metadata is stored there.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Project to connect Earth and space science publishers and data facilities to help translate aspirations of open, available, and useful data from policy into practice. Community driven project to implement common policies and standards to accelerate scientific discovery by promoting open and FAIR data.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Web application for visualisation of information derived from residue contact predictions in combination with other sources of information, such as secondary structure predictions, transmembrane helical topology, sequence conservation.Provides interactive interface for researchers in field of protein bioinformatics that are interested in analysing data on given protein.

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• RRID-Legacy
• 6 years ago - by Anonymous

Public land grant research university in Brookings, South Dakota. Founded in 1881, it is the largest and most comprehensive university and the oldest continually operating university in South Dakota.

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• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Software package that integrates BioMart data resources with data analysis software in Bioconductor. Can annotate range of gene or gene product identifiers including Entrez Gene and Affymetrix probe identifiers with information such as gene symbol, chromosomal coordinates, Gene Ontology and OMIM annotation. Enables retrieval of genomic sequences and single nucleotide polymorphism information, which can be used in data analysis.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software graphical gene set enrichment tool for animals and plants. Graphical web application to gain insights from gene sets. Features include graphical visualization of enrichment results and gene characteristics, and application program interface access to KEGG and STRING for retrieval of pathway diagrams and protein-protein interaction networks.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software R package developed for accurate annotation of genes and quantitative trait loci located in regions identified in common genomic analyses performed in livestock, such as Genome Wide Association Studies and transcriptomics using RNA-Sequencing. Allows graphical visualization of gene and QTL annotation results, data comparison among different grouping factors like methods, breeds, tissues, statistical models, studies and QTL enrichment in different livestock species including cattle, pigs, sheep, and chickens.

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• SciCrunch
• 6 years ago - submitted by Pablo Fonseca

Software tool as R script to provide function that takes two arguments: path to folder of plain text files named by their DOI, and output filename. For each file in folder, it searches for trial identifiers based on regex matching and writes CSV that contains all trial registration numbers and in case of ClinicalTrials.gov entries, whether they correspond to registry entry on ClinicalTrials.gov.

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• SciCrunch
• 6 years ago - submitted by Benjamin Gregory Carlisle

Offers automated sample preparation and two distinct mass spectrometry platforms with services, ranging from shotgun lipidomics to isotope labeling and mathematical modeling of lipid flux parameters.Offers data analysis and consultation services to provide users with accurate analysis of lipid metabolic parameters.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Web service for all stages of manuscript writing and publication. Offers Translation services where manuscript will be converted to English by translators ,Publication Support services to assist with journal selection and journal submission, manuscript editing.

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• RRID-Legacy
• 6 years ago - by Anonymous

Platform of Biorelate to all auto curated data captured from millions of textual articles. Galactic lets you build intuitive queries and explore results through different views that best suit your research needs.Used by pharmaceutical and biotech companies to explore auto curated knowledge from millions of text sources, revealing hidden insights that might otherwise be lost.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software tool for managing extraction of large volumes of data from primary sources among multiple users, and then reconciling differences between them. Designed for use in systematic review projects in academic context.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software tool for quantitative proteomics,mass spectrometry and processes spectra and LC runs to find quantitative information about proteins and peptides. Though automated it also allows manual inspection and change.Entry in MSQuant is Mascot search engine.

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• RRID-Legacy
• 6 years ago - by Anonymous

Online community for whole brain connectomics.Game like platform open to all to help crowdsource first complete wiring diagram of centralized brain. In fruit fly brain sliced and imaged by electron microscopy, we identified pieces of neurons by artificial intelligence. Players search for right pieces and put together 3D neurons that advance understanding of brain circuits. Enables circuit analysis by reconstructing and analysing connectome of mechanosensory neurons.

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• dkNET
• 6 years ago - submitted by Maryann Martone

Software R package to quantify and interpret divers of variation in multilevel gene expression experiments.Provides statistical and visualization framework for studying drivers of variation in RNA-seq datasets in many types of high throughput genomic assays including RNA-seq gene-, exon- and isoform-level quantification, splicing efficiency, protein quantification, metabolite quantification, metagenomic assays, methylation arrays and epigenomic sequencing assays.

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• RRID-Legacy
• 6 years ago - by Anonymous

Comprehensive database of Short Tandem Repeat DNA profiles for all of ATCC human cell lines. ATCC data collection as part of continuing efforts to characterize and authenticate cell lines in Cell Biology collection.

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• RRID-Legacy
• 6 years ago - by Anonymous

Shared resource hosting advanced cryo–electron microscopes fitted with direct detectors as well as equipment for sample preparation.

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• SciCrunch
• 6 years ago - submitted by Todd Monroe

Facility to manufacture cell based products and clinical grade reagents for treatment of patients on Phase I, II and III clinical trials. Cleanroom environment for manufacturing and preparing human cells, tissues and tissue based products. CAP Accredited.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth