Curator Dashboard

Software tool as scalable GWAS Association Testing pipeline for biobank scale datasets.

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• SciCrunch
• 6 years ago - by Anonymous

Software python package that allows to count antibody TAGS from CITE-seq and/or cell hashing experiment. Software tool that allows to get UMI counts from single cell protein assay. Used to count (UMI counts) antibody-derived-tags (ADTs) or Cell Hashing tags (HTOs) in raw sequencing reads and build count matrix.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software tool as suite of tests for identifying dynamic temporal gene regulation using single cell RNA-seq data.Trajectory based differential expression analysis for sequencing data.

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• RRID-Legacy
• 6 years ago - by Anonymous

Public archive for raw electron microscopy image data. Resource for raw 2D electron microscopy images. Used to browse, upload and download raw images to build 3D structure. Provides access to raw data to facilitate methods development and validation. Complements Electron Microscopy Data Bank where 3D volumes are stored, and uses Aspera platform for data transfers.

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• dkNET
• 6 years ago - submitted by Maryann Martone

Software suite to enable discoverability of datasets. Enables submission of metadata on datasets to DataMed. Has core set of elements, which are generic and applicable to any type of dataset, and extended set that can accommodate more specialized data types. Platform independent model developed by NIH BD2K bioCADDIE project for DataMed Data Discovery Index prototype being developed. Also available as annotated serialization in schema.org, which in turn is widely used by major search engines like Google, Microsoft, Yahoo and Yandex.

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• SciCrunch
• 6 years ago - submitted by Jeffrey Grethe

UCSD based bioinformatics lab composed of several projects in different biomedical disciplines. Established in 2008 as Neuroscience Information Framework and has since expanded to include broader field of biomedical research. Leader in developing and providing novel informatics infrastructure and tools for making data FAIR: Findable, Accessible, Interoperable and Reusable. FAIR Data informatics laboratory develops SciCrunch.org platform.

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• SciCrunch
• 6 years ago - submitted by Jeffrey Grethe

Free curriculum, resources, and research for those considering incorporation of remote health monitoring.

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• dkNET
• 6 years ago - submitted by Maryann Martone

Open source mobile health platform for collecting, monitoring, and analyzing data using sensors, wearables, and mobile devices. Enables study design and set up, active and passive remote data collection, secure data transmission via Wifi and/or Bluetooth and scalable solutions for data storage, management and access. Allows study participants to share their health data with clinicians and researchers in secure way.

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• dkNET
• 6 years ago - submitted by Maryann Martone

Versatile plate reader that can be used to measure fluorescence intensity from both top and bottom of plate, colorimetric absorbance and luminescence.

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• RRID-Legacy
• 6 years ago - by Anonymous

HoloMonitor live cell imaging and analysis system by Phase Holographic Imaging PHI AB. Contains small, digital live cell, quantitative phase imaging microscope HoloMonitor M4 designed to operate constantly inside incubator and HoloMonitor cell imaging software App Suite or Hstudio to continuously monitor and quantitatively analyze both individual cells and cell populations over time without any cellular labels or stains. Microscope can operate in cell incubator, hypoxia chamber or on lab bench.

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• RRID-Legacy
• 6 years ago - submitted by Phase Holographic Imaging PHI AB

Software tool to download and parse information from ClinicalTrials.gov at the time of search to populate the graph of clinical trials. FDA information is updated weekly from Drugs at FDA dataset and FDA postmarketing commitment data set.

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• SciCrunch
• 6 years ago - submitted by Benjamin Gregory Carlisle

Software tool for mass downloading of historical clinical trial data from ClinicalTrials.gov.

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• SciCrunch
• 6 years ago - submitted by Benjamin Gregory Carlisle

Software Python package to collect, organise and manage neuroscience data in Brain Imaging Data Structure format.Software package for Windows 10 to collect, organise and manage neuroscience data in BIDS format.

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• RRID-Legacy
• 6 years ago - by Anonymous

dkNET service that provides detailed overview of individual research resources along with citation metrics from biomedical literature, community feedback and alerts, information about who used resource, and information about what resources have been used together. The only integrated data set and analytics platform combining Research Resource Identifiers (RRIDs), text mining and data aggregation. Users can identify key resources while also tracking resource use and performance.

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• dkNET
• 6 years ago - submitted by Ko-Wei Lin

dkNET service that assists researchers in preparing authentication plans for cell lines or antibodies to comply with NIH Submission Policy when submitting proposal or publication. Automated tool to enable researchers to create customized report based on key biological resources they plan to use. These customized reports provide additional information such as known problems with particular cell line or antibody.

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• dkNET
• 6 years ago - by Anonymous

Software package for graphs and network analysis. Provides functions for generating random and regular graphs, graph visualization, centrality methods and much more.Can be programmed in R, Python, Mathematica, C/C Plus Plus.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software tool to convert data files from Mac program such as Igor and Pulse or John Dempster CDR, WinTida, to ABF formats and analyze them with Mini Analysis Program.

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• RRID-Legacy
• 6 years ago - submitted by Chao Yi

Web platform for electronic data capture by OpenClinica, LLC. Used as clinical trial management system.

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• RRID-Legacy
• 6 years ago - submitted by Pedro Mercader

Software tool to convert data files from Mac program such as Igor and Pulse or John Dempster CDR, WinTida, to ABF formats and analyze them with Mini Analysis Program.

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• RRID-Legacy
• 6 years ago - submitted by Chao Yi

Open source software tool as programmatic framework and command line tool designed to aid process of MHC binding prediction. Provides access to multiple binding prediction algorithms under single interface and scales for whole genomes using multiple target MHC alleles.Software should be run on Linux operating system. Ubuntu is recommended but most major distributions will be fine. Windows is not supported.

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• RRID-Legacy
• 6 years ago - submitted by Damien Farrell