Curator Dashboard

Software Julia package that implements iterative hard thresholding as multiple regression model for GWAS. Built-in support for handling PLINK and VCF files, parallel computing, fits a variety of GLM models, and handles grouping/weighting SNPs.

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• SciCrunch
• 6 years ago - submitted by benjamin chu

Portal includes vocabulary to assist global response to Coronavirus outbreak. Creates, maintains, and promotes schemas for structured data.

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• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Information about coronaviruses, including COVID-19. NIAID provides research funding and resources for scientific community to facilitate development of vaccines, therapeutics, and diagnostics for infectious diseases, including those caused by coronaviruses.

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• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Committee provides expert consultation on data elements and systems design for modeling and decision making for COVID-19 pandemic. Assembled at request of White House Office of Science and Technology Policy and Office of Assistant Secretary for Preparedness and Response in response to COVID-19 outbreak. Provides expert consultations on several topics, such as surface stability and incubation, social distancing, and crisis standards of care.

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• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Group of volunteer data scientists, machines learning experts, bioinformaticians and professional software developers who have joined together to offer their expertise for any data analysis problems that arise in context of ongoing coronavirus pandemic.

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• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Consortium encompasses computing capabilities from powerful and advanced computers in the world. Used to empower researchers to accelerate understanding of COVID-19 virus and development of treatments and vaccines to help address infections. Teams who receive Consortium access will publish their results in open scientific literature. All supported projects will have name of principal investigator, project title and project abstract posted to COVID-19 HPC Consortium web site.

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• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Cloud resources for COVID-19 research provided by Rescale, Google Cloud, and Microsoft Azure. High performance computing resources immediately available for COVID-19 research.

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• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Network as federated AI-ready repository of COVID-19 data adherent to FAIR principles. SARS CoV-2 virus data FAIR, meaning that they are Findable, Accessible, Interoperable and thus Reusable by both humans and machines, during this epidemic of COVID-19.

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• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Data warehouse using Observational Medical Outcomes Partnership standard to integrate patient data across University of California health systems. Data asset created by electronic health records from six health systems as well as claims data from UC self-funded health plans and external sources of data such as Vizient and California Office of Statewide Health Planning and Development. Shared data and analytic environment designed to improve research and patient treatments.

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• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Guidelines for data deposition in any common data hub or platform to facilitate data sharing in public health emergencies for scientific research.

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• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Resource to aggregate all outbreak information into single location during outbreaks of emerging diseases, such as COVID-19.

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• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Portal for COVID-19 modeling research. Public access data collections with documented metadata.Computational models to study transmission dynamics of broad range of infectious diseases.

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• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

NLM curated literature hub for COVID-19. Curated literature hub for tracking up-to-date scientific information about 2019 novel Coronavirus. Provides central access to relevant articles in PubMed. Articles are updated daily and are further categorized by different research topics and geographic locations for improved access.

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• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Broad Terra cloud workspace for best practices with COVID-19 genomics data. Raw COVID-19 sequencing data from NCBI Sequence Read Archive. Workflows for genome assembly, quality control, metagenomic classification, and aggregate statistics.

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• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Portal to discover COVID-19 open research data on Figshare. Figshare collection of COVID-19 related research data.

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• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

All Dimensions publications, datasets, and clinical trials related to COVID-19, updated daily.

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• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Dataset of scholarly articles, including full text, on COVID-19, SARS-CoV-2, and related coronaviruses. Machine readable resource provided to enable application of natural language processing and other AI techniques. Open resource for global research community. Updated weekly as new research is published in peer-reviewed publications and archival services like bioRxiv, medRxiv, and others.

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• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

COVID-19 open access data and computational resources provided by federal agencies, including NIH, public consortia, and private entities. Continuously updated as more information becomes available. These resources are being shared for scientific and public health interests, and content is responsibility of resource organizers.

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• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Portal to make cancer related proteomic datasets easily accessible to public. Facilitates multiomic integration in support of precision medicine through interoperability with other resources. Developed to advance our understanding of how proteins help to shape risk, diagnosis, development, progression, and treatment of cancer. One of several repositories within NCI Cancer Research Data Commons which enables researchers to link proteomic data with other data sets (e.g., genomic and imaging data) and to submit, collect, analyze, store, and share data throughout cancer data ecosystem. PDC provides access to highly curated and standardized biospecimen, clinical, and proteomic data, intuitive interface to filter, query, search, visualize and download data and metadata. Provides common data harmonization pipeline to uniformly analyze all PDC data and provides advanced visualization of quantitative information. Cloud based (Amazon Web Services) infrastructure facilitates interoperability with AWS based data analysis tools and platforms natively. Application programming interface (API) provides cloud-agnostic data access and allows third parties to extend functionality beyond PDC. Structured workspace that serves as private user data store and also data submission portal. Distributes controlled access data, such as patient-specific protein fasta sequence databases, with dbGaP authorization and eRA Commons authentication.

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• dkNET
• 6 years ago - submitted by Ko-Wei Lin

Provides development and support of genomics-based research, serving investigators in Nevada and beyond. Staff can be contracted for select services including ABI 3130 DNA sequencing, BD FACSCalibur flow cytometry, Affymetrix microarray processing, Agilent 2100 Bioanalyzer analysis and Qubit analysis. Facility also provides equipment and training for real-time PCR, Western blot/gel/microarray scanning, and analysis of DNA, RNA and protein samples.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth