Curator Dashboard

SPARC data repository as of 2023 is an open data repository developed as part of the NIH SPARC initiative and has been used by SPARC funded investigator groups to curate and publish high quality datasets related to the autonomic nervous system. We are thrilled that as of August 2022, SPARC is accepting datasets from investigators that are not funded through the NIH SPARC program. The NIH's Common Fund Stimulating Peripheral Activity to Relieve Conditions (SPARC) program aims to transform our understanding of these nerve-organ interactions and ultimately advance neuromodulation field toward precise treatment of diseases and conditions for which conventional therapies fall short.

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• SciCrunch
• 8 years ago - submitted by Anita Bandrowski

Software R package designed to work with pre-normalized data derived from Reverse Phase Protein Arrays (RPPA), downstream of RPPASPACE. Provides a compendium of functions related to analytical pipelines with graphical visualization and figure generation.

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• RRID
• 1 month ago - by Anonymous

A high-performance visualization tool for interactive exploration of large, integrated genomic datasets.

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• SciCrunch
• 13 years ago - by Anonymous

Facility at Advanced Science Research Center of City University of New York provides research resources and services that include nucleic acid extraction and fragmentation, quantitative gene expression analysis, targeted DNA methylation analysis in specific genomic loci of interest, next generation sequencing RNA-seq and ChIP-seq, and single cell genomics.Provides advanced cell sorter with biosafety protection for flow cytometry service, services for RNAScope to allow for in situ hybridization detection of transcriptional targets with spatial resolution.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Core provides support including management of and access to instrumentation cores and other equipment, clinical research coordination, writer, editor, and biostatistician services.

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• RRID
• 3 weeks ago - by Anonymous

It is based on the Galaxy-framework and provides tools for read mapping, transcript reconstruction and quantitation as well as differential expression analysis.

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• SciCrunch
• 13 years ago - by Anonymous

Software tool used for predictions of molecular packing and interactions. General purpose coarse grained force field for molecular dynamics simulations of biomolecular systems Martini 3 is refined model with improved interaction balance, new bead types and expanded ability to include specific interactions representing, for example, hydrogen bonding and electronic polarizability.

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• RRID-Legacy
• 5 years ago - submitted by Nicolai Johansen

Core Facility provides comprehensive bioinformatics support for cancer research, including experimental design, data processing, statistical analysis, and biological interpretation of high-throughput genomic data. Offers expertise in bulk and single-cell RNA sequencing, DNA sequencing and variant analysis, spatial transcriptomics, epigenomics, image analysis, and integrative multi-omics analysis. BISR also develops and maintains computational workflows, provides AI and machine learning expertise, and supports the computational infrastructure needed for large-scale genomic analyses, image processing, and AI-driven research.

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• SciCrunch
• 2 weeks ago - submitted by Edyta Vieth

A large-scale orthology database for prokaryotes and eukaryotes inferred by evolutionary evidence. Contnet includes orthology predictions among 1621 complete genomes (1365 bacterial, 92 archaeal, and 164 eukaryotic), covering >7 million proteins and 4 million pairwise orthologs; Orthologous groups, comprising >300000 groups of orthologous proteins and >236000 corresponding gene trees; and inparalog groups, comprising >500000 groups of inparalogs.

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• SciCrunch
• 13 years ago - by Anonymous

Software R package for statistical analysis of mixed ploidy populations.Used for calculation of population structure and differentiation based on single nucleotide polymorphism genotype data from populations of any ploidy level, and/or mixed ploidy levels.

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• RRID-Legacy
• 5 years ago - submitted by Brandon Pickett

Core is a shared research resource of the Injury Control COBRE. The Injury Control Digital Innovation (ICDI) Core transforms the measurement, development, and delivery of injury control research on a wider scale through expert support and technical assistance in digital health innovation for junior investigators and COBRE-affiliated researchers at Rhode Island Hospital as well as the broader scientific community.

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• RRID
• 1 week ago - submitted by Julie Bromberg

Software that segments DNA copy number data using circular binary segmentation to detect regions with abnormal copy number.

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• SciCrunch
• 13 years ago - by Anonymous

Provides investigators with capabilities to identify, characterize, and quantify biomolecules present in tissues, cells, and biological fluids. Facility houses both Proteomics and Metabolomics Cores, and aims to assist members with solving difficult or previously intractable problems in biomedical research. Methods for biomolecule isolation, separation, quantification, identification and bioinformatics analysis, together with expert guidance in study design, are integrated into expertise offered by the Facility.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

University of New Hampshire is a public land-grant research university with its main campus in Durham, New Hampshire, United States. It was founded and incorporated in 1866 as a land grant college in Hanover, moved to Durham in 1893, and adopted its current name in 1923.

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• RRID
• 1 day ago - submitted by Edyta Vieth

A fully scalable online pre-processing algorithm for short oligonucleotide microarray atlases.

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• SciCrunch
• 13 years ago - by Anonymous

Software app for microscope metadata.

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• RRID-Legacy
• 5 years ago - submitted by Anita Bandrowski

Data sharing repository of clinical trials, associated mechanistic studies, and other basic and applied immunology research programs. Platform to store, analyze, and exchange datasets for immune mediated diseases. Data supplied by NIAID/DAIT funded investigators and genomic, proteomic, and other data relevant to research of these programs extracted from public databases. Provides data analysis tools and immunology focused ontology to advance research in basic and clinical immunology.

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• dkNET
• 14 years ago - by Anonymous

Core provides isolation, characterization, and analysis of extracellular vesicles and other nano sized particles.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

The Northeast ALS Consortium (NEALS) is an independent, non-profit consortium of clinical and scientific investigators who conduct research in Amyotrophic Lateral Sclerosis (ALS) and Upper Motor Neuron Disease (UMND) research at their affiliated institutions. The mission of NEALS is to take advances in ALS and UMND research from the lab and rapidly translate them into treatments for people. Databases and samples are available for researchers studying these diseases.

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• SciCrunch
• 16 years ago - by Anonymous

Software tool for sequence mapping.The next version of BWA-MEM. Used for aligning sequencing reads against large reference genome.

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• RRID-Legacy
• 4 years ago - submitted by Brandon Pickett