Curator Dashboard

Software statistical framework for reconstructing genomes from metagenome data. Open source software tool for accurately reconstructing single genomes from complex microbial communities.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Fan Jiang

Open source pipeline to automatically identify embryo dysmorphology from 3D volumetric images. Automated image analysis for developmental phenotyping of mouse embryos.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Software tool for genome annotation. Eukaryotic gene prediction tool focused on evidence supported by expressed sequences like transcripts and conserved proteins alignments. Can be used to reannotate genomes, to do comparative gene prediction and improve existing genome annotation. Can predict gene models with canonical and non-canonical splice sites.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

System that consists of Application Programming Interface which controls access to information stored in database, and web interface that provides way of interacting with data stored in GenTaR database. Users can track production and phenotyping of different types of mutant allele. Allows consortia to follow progress made in characterising set of genes that they are interested in. To create new project or plan, or to view consortium gene list in GenTaR credentials to log into GenTaR are required. Project search box enables to look for projects working on specific gene by entering gene symbol or gene MGI accession identifier. Search results without logging in will only include public data. Otherwise application search results also include data for Protected and Restricted projects.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Software tool to perform large scale clustering analysis of Biosynthetic Gene Cluster data.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Satria Kautsar

Software package for education and data analysis. Used for scientific data analysis, with functions for data manipulation, plotting, univariate and multivariate statistics, ecological analysis, time series and spatial analysis, morphometrics and stratigraphy.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Cloud based data science infrastructure that provides secure access to cancer research data from NCI programs and key external cancer programs. Serves as coordinated resource for public data sharing of NCI funded programs. Users can explore and use analytical and visualization tools for data analysis. Enables to search and aggregate data across repositories including Cancer Data Service, Clinical Trial Data Commons, Genomic Data Commons, Imaging Data Commons, Integrated Canine Data Commons, Proteomic Data Commons.

• Resource
• dkNET
• 6 years ago - submitted by Ko-Wei Lin

Portal for finding and analyzing cancer imaging data. Part of Cancer Research Data Commons to support cancer imaging research. Provides cloud based access to medical imaging data and library of analytical tools and workflows to share, analyze, and visualize multi modal imaging data from both clinical and basic cancer research studies.

• Resource
• dkNET
• 6 years ago - submitted by Ko-Wei Lin

Commercial organization provides software PRIMER and PERMANOVA for multivariate analysis. PRIMER v7 used for range of univariate, graphical and multivariate routines for analysing arrays of species by samples data from community ecology.​

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Software R package to support functions and datasets for Venables and Ripley MASS. Used for statistical and graphical analysis of data.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Software R package contains functions to test for significant differences in coefficients of variation among multiple groups of observations.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Software R package for perceptual analysis, visualization and organization of spectral colour data. Software framework for parsing, analyzing and organizing colour from spectral data. Used for spectral and spatial analysis of color patterns.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Software tool for phylogenetic analysis under parsimony as well as extensive tree handling and diagnosis capabilities.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Open source software tool for analysing trace files generated by Bayesian MCMC runs. Software package for visualising and analysing MCMC trace files generated through Bayesian phylogenetic inference. Provides kernel density estimation, multivariate visualisation, demographic trajectory reconstruction, conditional posterior distribution summary and more.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Core offers bioinformatics consulting and data analysis services to help researchers analyze and understand large data sets acquired from next generation sequencing and array based technologies.Bioinformatics staff members have extensive experience in bioinformatics, genomics, transcriptomics and translational informatics in plant, animal and microbial systems. Expertise includes big data analysis, statistical analysis, software development and high performance computing.

• Resource
• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Cytometry core offers project consulting, experimental design and optimization as well as data analysis services. Provides tools and staff expertise for both live and fixed cell analysis. Provides FACS ARIA and SONY SH800 sorters to help users sort cells of interest. Offers microscopes for self service users. Microscope brands include Leica SP5 Confocal, Nikon Multiphoton Confocal system, Nikon Live cell Imaging platform, Olympus spinning Disk Confocal instruments, Keyence BZX800.

• Resource
• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Core provides services in bioimaging and high throughput screening, structural biology, mass spectrometry, biomolecular analytics, cell biology and genomics.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Interactive database of software tools for analysis of long read sequencing data.Catalogue of long-read sequencing data analysis tools. Catalogue of downstream analysis tools of real and synthetic long-read technologies.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Advanced imaging facility providing various imaging techniques in microscopy. Focus is on techniques, instrumentation and know-how in electron and light microscopy including preparation.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Urs Ziegler

Software tool as implementation of network based statistics toolbox in R. Includes mixed effects models.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous