Curator Dashboard

Automated image analysis software package for accurately visualizing and quantifying biomarkers in tissue sections. Designed to meet workflow and throughput needs of research pathology, oncology, immunology. Used for tissue analysis., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Multidisciplinary in vivo core facility equipped with equipment for detailed behavioral analyses and surgical procedures in context of mouse and rat models of neurological, cognitive and psychiatric disorders.Services include Behavioral analyses, Cognitive function,learning and memory, Sensory motor function, Emotional function and social interactions,Pain sensitivity tests, Disease models, Viral gene delivery, stereotactic and surgical manipulations, Optogenetics, In vivo electrophysiology.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Core provides platforms including Illumina NextSeq500 and MiSeq, HiSeq3000 and Pacific Biosciences SEQUEL system. Offers free consultation in sequencing technologies including read length, error rate, predominant type of error, data output/run, speed, cost. Services include de novo sequencing of whole genomes, targeted sequencing, transcriptome sequencing, chromatin immunoprecipitation sequencing, methylation analysis and metagenomics.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Provides service and training in proteomics and mass spectrometry. Services in proteomics, differential proteomics, two dimensional difference gel electrophoresis, isobaric tags for relative and absolute quantitation, tandem mass tags, iodoTMT, stable isotope labeling with amino acids in cell culture, quantification of proteins by label-free LC-MS/MS, and analysis of protein post translational modifications and molecular weight determination. Core offers education, consultation, data processing and reporting, and support of grant application.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Brings together Centers for Disease Control and Prevention, National Institutes of Health, Robert Wood Johnson Foundation, and U.S. Department of Agriculture to accelerate progress in reducing childhood obesity in America, to manage projects and reach common goals, to coordinate funding to make the most of available resources, to share insights and expertise to strengthen research. NCCOR focuses on efforts that have to benefit children, teens, and their families, and communities in which they live.

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• dkNET
• 6 years ago - submitted by Ko-Wei Lin

Software tool as snakemake implementation of DADA2 to process amplicon sequencing data for microbial ecology.

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• SciCrunch
• 6 years ago - by Anonymous

Software package for large scale genomic DNA methylation analysis. Filters and processes aligned bisulphite sequenced data to generate comprehensive reference methylomes in different units for any genome. Processes aligned SAM files of multiple samples to provide reliable and statistically significant differentially methylated regions, then relate them to proximal genes and CpG features with reasonable rapidity.

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• RRID-Legacy
• 6 years ago - by Anonymous

Core develops new mouse monoclonal antibodies for investigators to use in basic and applied research.Provided services include immunization of mice, cell fusion, cell cloning, screening by ELISA and Western blot, monoclonal antibody production, purification and labeling, monoclonal antibody analyses such as antibody/antigen affinity measurements, epitope binning and identification of matched antibody pairs. Customer training on select self-service instruments is also offered.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

ICBR Electron Microscopy supports researchers in visualizing microscopic structures through imaging projects and user training. Provided serives include room temperature and cryo transmission and scanning electron microscopy, confocal laser scanning microscopy, sample preparation and user training.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Core provides services and consultation on Single Cell RNA-Seq, RNA-Seq, 16s metagenomics and Affymetrix gene expression arrays. High-throughput RNA-seq libraries, 16s libraries and sequencing capture libraries can be done by using Agilent Bravo robot. QuantiGene RNA Assays measure up to 80 gene targets directly with degraded and cross-linked RNA in FFPE tissues and blood, with no RNA purification required.BioRad QX200 AutoDG Droplet Digital PCR System provides absolute quantification of target DNA or RNA molecules with greater precision and sensitivity than qPCR, sensitivity off ddPCR System can facilitate expanded analysis of single cells. Genotyping services include fragment analysis using AB3730, 96 capillary technology, development of microsatellite libraries using Illumina sequence data, and genotyping using mouse tails or ear punches.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Portal about prospective investigations into risk factors for major chronic diseases in women. Nurses were selected as study population because of their knowledge about health and their ability to provide complete and accurate information regarding various diseases, due to their nursing education.The largest longitudinal study of women. Started in 1976, involving 275000 participants.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Electronic database that tracks controlled substance prescriptions in state. PDMPs can provide health authorities timely information about prescribing and patient behaviors that contribute to epidemic and facilitate nimble and targeted response. This public tool is used for drug overdose monitoring from Centers for Disease Control and Prevention.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Mobile genome analysis application, with capabilities to align reads, call variants, and visualize results entirely on iOS device. Optimized to run in mobile environment and has performance comparable to popular desktop genomics software.

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• SciCrunch
• 6 years ago - by Anonymous

Core provides facilities including cell analysis and imaging, genomics and bioinformatics, proteins and diagnostics. Services include experimental design advice, sample preparation,data generation,data analysis.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Web tool for thermal neutron cross sections. Data of scattering lengths and corresponding scattering and absorption cross sections of elements. Data go through element number 96Cm. Used for study of condensed matter structure and dynamics.

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• RRID-Legacy
• 6 years ago - by Anonymous

Silhouette images of animals, plants, and other life forms, available for reuse. Database stores reusable silhouette images and phylogenetic taxonomy of all organisms. Each image is associated with one or more taxonomic names and indicates roughly what ancestral member of each taxon looked like.

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• RRID-Legacy
• 6 years ago - by Anonymous

Integrates advanced reproductive and developmental biology technologies. Environment for animal research experiments through innovative research in development of novel experimental animal models and related technical support activities. Manages SPF rodent facility at RIKEN Kobe Campus and accommodates variety of animal research needs, including animal material and resource support, technical training, and education for proper conduct of animal research. Provides established colonies of Soricomorpha species, suncus (Suncus murinus), metatherian species, gray short-tail opossum (Monodelphis domestica), and reptilian species, gecko (Paroedura picta) for prospective distribution services of these new resources to research community. Generates and distributes novel genetically engineered mice with domestic and international biomedical research community, as well as conducting original research projects in live imaging and analyses of early mouse development.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web interface to Elastic Network Model that provides tool for computing, visualizing and analysing low frequency normal modes of macromolecule. Normal mode web server for protein movement analysis and generation of templates for molecular replacement with no upper limit to protein size that can be treated. Input of protein structure is in Protein Data Bank format.

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• RRID-Legacy
• 6 years ago - by Anonymous

Open source software tool for assigning objective taxonomic classifications to bacterial and archaeal genomes based on Genome Database Taxonomy. Designed to work with recent advances that allow metagenome assembled genomes to be obtained directly from environmental samples. Can also be applied to isolate and single cell genomes.

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• RRID-Legacy
• 6 years ago - submitted by Fan Jiang

Software tool for genome and metagenome distance estimation using MinHash. Reduces large sequences and sequence sets to small, representative sketches, from which global mutation distances can be rapidly estimated.

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• RRID-Legacy
• 6 years ago - submitted by Fan Jiang