Curator Dashboard

Software tool that integrates histology reconstruction, MRI co-registration, and manual segmentation tools in easy-to-use and intuitive interface. Permits real-time interaction with complex and large histology datasets during co-registration steps of histology reconstruction. Software tool for interactively mapping 2D and 3D molecular and anatomical histology into Common Coordinate Frameworks. Has simple, interactive registration workflows that connect user images with CCFs.

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• SciCrunch
• 6 years ago - submitted by Anita Bandrowski

Free software algorithms for forward and inverse modelling for Electrical Impedance Tomography (EIT) and Diffusion based Optical Tomography, in medical and industrial settings, and to share data and promote collaboration between groups working these fields.

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• NIF
• 6 years ago - submitted by Maryann Martone

Software reproducible, continuously updating platform which benchmarks performance of spike sorting codes across large curated database of electrophysiological recordings with ground truth. Website and open source computing framework for evaluating and comparing spike sorting algorithms for neurophysiology data analysis. Project of Center for Computational Mathematics at Flatiron Institute.

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• NIF
• 6 years ago - submitted by Maryann Martone

Research infrastructure for the EU Human Brain Project. Provides digital tools and services which can be used to address challenges in brain research and brain inspired technology development. Digital research infrastructure, created by EU-funded Human Brain Project, that gathers extensive range of data and tools for brain-related research. EBRAINS will capitalize on the work performed by the Human Brain Project teams in digital neuroscience, brain medicine, and brain-inspired technology.You can share your neuroscience data, models and software.

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• NIF
• 6 years ago - submitted by Maryann Martone

Software tool as parallel processing framework for large scale generation of secondary RNA structures and folding statistics for transcriptome of any species.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software tool as deep collaborative learning with application to study of multimodal brain development. Uses deep network to represent original data and then seeks their correlations, while also linking data representation with phenotypical information.

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• NIF
• 6 years ago - by Anonymous

Project to provide data on genome and epigenome of human lung to facilitate research efforts of investigators studying diseases of lung including COVID-19.Collaboration among multiple groups at University of California including Center for Epigenomics, Gaulton lab and Sun lab at UCSD Department of Pediatrics. This work is conducted as part of LungMAP consortitum.

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• dkNET
• 6 years ago - submitted by Maryann Martone

Software platform for synchronized viewing and analysis of video footage and audio files in observational research by Mangold International GmbH. Qualitative and quantitative video coding software.

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• RRID-Legacy
• 6 years ago - by Anonymous

Open software pipeline for analyzing RNA-seq to predict neoepitopes derived from small to large sized indels. Used for identifying indel derived neoantigens using RNA-Seq data.

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• RRID-Legacy
• 6 years ago - submitted by Tingyou Wang

A manufacturer of early discovery research products including antibodies, recombinant proteins, ELISA kits, second step reagents and other life sciences products.

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• SciCrunch
• 6 years ago - submitted by Nathan Anderson

Commercial antibody company that uses proprietary selection criteria and selects antibodies to be sold under their name.

• Organization
• SciCrunch
• 6 years ago - submitted by Nathan Anderson

Commercial antibody company that focuses on the development, production, purification, conjugation, and commercialization of antibodies.

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• SciCrunch
• 6 years ago - submitted by Nathan Anderson

An antibody manufacturer based in Aurora, Colorado.

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• SciCrunch
• 6 years ago - submitted by Nathan Anderson

Open source designs for customizable, MRI compatible microdrive capable of positioning probes including stimulating electrodes, recording electrodes, drug cannulae, or optogenetic fibers within brain. Design integrates cranial implant, penetration grid for guiding probes, and microdrive body assembly with actuators. Used by neuroscience community related to electrical microstimulation, neuronal recording, and local drug delivery.

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• RRID-Legacy
• 6 years ago - by Anonymous

Provides microscopes for life science research, including number of confocals, widefield systems, slide scanners, and analysis packages. Provides analytic instruments such as flow cytometers, imaging systems, and PCR equipment among others. Our team consists of experienced biologists and are available to help you with experiment building, troubleshooting, and data analysis.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Open source software platform for studying fruit fly brain function, and for investigating fruit fly brain disease models that are highly relevant to mechanisms of human neurological and psychiatric disorders. Collaborative ecosystem for accelerating discovery of functional logic of fruit fly brain. Includes FlyBrainLab and BrainMapsViz. Stores and integrates fruit fly brain research data. Repository of tools and methods to build, emulate and compare fruit fly brain models in health and disease. Open framework for fruit fly brain data processing and model execution.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software tool to distinguish virulent and temperate phage derived sequences in metavirome data with deep learning approach. Used to identify virome sequences as temperate phage derived or virulent phage derived fragments.

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• RRID-Legacy
• 6 years ago - submitted by Shufang Wu

Software tool as scalable GWAS Quality Control pipeline for biobank scale datasets.

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• SciCrunch
• 6 years ago - submitted by Jan Kässens

Software tool as scalable GWAS Association Testing pipeline for biobank scale datasets.

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• SciCrunch
• 6 years ago - by Anonymous

Software python package that allows to count antibody TAGS from CITE-seq and/or cell hashing experiment. Software tool that allows to get UMI counts from single cell protein assay. Used to count (UMI counts) antibody-derived-tags (ADTs) or Cell Hashing tags (HTOs) in raw sequencing reads and build count matrix.

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• RRID-Legacy
• 6 years ago - by Anonymous