Curator Dashboard

Open source acquisition program, based on Python programming language, for setting up BrainVision actiCHamp amplifier and storing data.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Auditory and visual stimulus delivery library for psychoacoustics in Python.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

National and international arabidopsis germplasm resource.Stores over million genotypes in physical stocks servicing worldwide Arabidopsis community in more than 50 countries. Stocks are provided under identical cost recovery conditions to academic and commercial researchers. Non-transgenic stocks are sent gratis to K-17 institutions and in special cases. Provides seed and information resources to International Arabidopsis Genome Programme and research community. Maintains accessions of Arabidopsis thaliana (and small number of other related species), including Characterized lines, Mapping populations, and Insertion lines. You may browse or search catalog.

• Resource
• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Open source software application that enables services for online surveys. Provides advanced support for all steps of web survey process. Conduct research and analysis from beginning to end.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Software tool for prediction of pathogenic proteins in genomic and metagenomic data. Used for identification of partial pathogenic proteins predicted from short (100-150 bp) metagenomic reads and also performs on complete protein sequences., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Software tool to provide parameter estimates from marked animals when they are re-encountered at later time, to create population size estimates. Used for analysis of data from marked individuals.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Software tool to model population dynamics as discrete, sequential events that occur according to probabilities that are random variables following user-specified distributions.Simulation of deterministic forces as well as demographic, environmental and genetic stochastic events on wildlife populations.Can model many of extinction vortices that can threaten persistence of small populations.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Software tool as SPM extension for longitudinal and repeated measures data. Modelling of longitudinal and repeated measures neuroimaging data.Implemented as Matlab toolbox for SPM8 or SPM12.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Electrophysiological recording software for use with RHD USB Interface Board by Intan Technologies.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Software tool for accurate cell type quantification from gene expression data. Uses gene expression data to estimate cell type abundances. Allows user to supply custom reference matrices.

• Resource
• SciCrunch
• 6 years ago - by Anonymous

An R package that automatically identifies and extracts indicators of transparency (data availability, code availability, statements of conflicts of interest, statements of funding, statements of protocol registration) from TXT and PMC XML versions of published research articles in biomedicine.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Software tool as molecular structure drawing application by ACD Labs. Allows user to Draw chemical structures, reactions, and schema, and access variety of graphical tools and templates, Generate names from molecular structure and vice versa, Calculate molecular properties from chemical structure, Create professional reports, presentations, and publication ready figures, Communicate scientific information with clarity and ease.

• Resource
• SciCrunch
• 6 years ago - submitted by Jeffrey Grethe

Standalone application for 3D visualisation and manipulation of mathematical field models. Cmgui is part of Continuum Mechanics, Imaging, Signal processing, System identification mathematical modelling environment. Generic open source modelling and visualisation package used to enable researchers to visualise biomedical images alongside dynamic geometry fields from computer models of cells, tissues and organs.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Neural Module by Axion BioSystems Inc, provides simplified approach to set up, execution and analysis of neural experiments. Enables Maestro Pro and Edge to record and analyze key parameters of neural network function, including activity, synchrony, and network oscillations.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Software tool for rapid and comprehensive quality assessment of raw sequence reads. It generates comprehensive list of QC statistics, including ancestry and contamination estimation.

• Resource
• SciCrunch
• 6 years ago - by Anonymous

Cloud comparison for transcript annotation data analysis pipeline. Workflow for comparing transcriptome annotation pipelines.

• Resource
• SciCrunch
• 6 years ago - by Anonymous

Website to visualize and share anatomical labels. Franklin and Paxinos (FP) based anatomical labels in Allen Common Coordinate Framework (CCF). Cell type specific transgenic mice and MRI atlas were used to adjust and further segment labels. New segmentations were created in dorsal striatum using cortico-striatal connectivity data. Anatomical labels were digitized based on Allen ontology, and web-interface was created for easy visualization. These labels provide resource to isolate and identify mouse brain anatomical structures. Open source data sharing will facilitate further refinement of anatomical labels and integration of data interpretation within single anatomical platform.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Describes number, types, and positions of cells in all areas of mouse brain. Provides densities and positions of all excitatory, inhibitory and neuromodulatory neurons, as well as astrocytes, oligodendrocytes and microglia in each of brain regions defined in Allen Mouse Brain Atlas. Users can download cell numbers for statistical analysis, cell positions and types for modeling and visualizing brain areas. Underlying workflow uses imaging data from Allen Institute Common Coordinate Framework to generate cell positions and assign their type using API for data access.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Software tool that extends WholeBrain framework in R for segmenting and registering experimental images to Allen Mouse Common Coordinate Framework (CCF). Streamlines processing of large volumetric LSFM datasets and solves issues with non-uniform morphing across anterior-posterior axis with interactive “choice game.” Accounts for duplicate cell counts in adjacent z images and presents new ways to easily parse apart and interactively visualize final mapped datasets.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Open source and multi-platform pinning software tool to facilitate mapping samples into common 3D spaces. Desktop application based on 3D Slicer that displays Allen Institute for Brain Science CCF or MNI atlas, color segmented by structure of brain, and allows user to create planar polyline annotation to facilitate mapping samples into corresponding atlas.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski