Curator Dashboard

Software tool as interface for reading and writing SAM files. Python module to read and manipulate mapped short read sequence data stored in SAM/BAM files. Lightweight wrapper of htslib C-API.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Software tool designed to support Leica Biosystems Aperio VERSA scanner. Digital pathology scanning software. Used for diverse imaging needs for digital pathology.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Proprietary software package for data analysis by BMG Labtech.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Software tool for management of animal facility data by Scionics Computer Innovation GmbH. Used by laboratory animal facilities. Used by researchers, animal house managers, animal keepers and others to access their data from same source. Available in English, French, German, Italian, Portuguese and Spanish.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Neuroimaging datasets available from TReNDs including resting state MRI.

• Resource
• dkNET
• 6 years ago - submitted by Maryann Martone

Software Python library for secure and private Deep Learning. Decouples private data from model training, using Federated Learning, Differential Privacy, and Encrypted Computation and Homomorphic Encryption within main deep learning frameworks. Used for computing on data you do not own and cannot see.

• Resource
• dkNET
• 6 years ago - submitted by Maryann Martone

Web tool for creating digital profile of scientific discoveries in article and connecting them to related research. Authors describe molecular interactions supported by their results, letting researchers explore first hand account of article findings and connect to related articles and knowledge. Web based system for scientists to compose structured representation of networks of interactions between genes, their products, and chemical compounds, represented using power of formal ontology.

• Resource
• NIF
• 6 years ago - submitted by Maryann Martone

Open source web based visualization tool for exploring crosslinking mass spectrometry results. Displays residue resolution positional information including linkage sites and linked peptides, all types of crosslinking reaction product, ambiguous results and additional sequence information such as domains.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Networks of extrasynaptic aminergic and peptidergic interactions in C. elegans

• Resource
• NIF
• 6 years ago - by Anonymous

Scientific discovery game about neuroscience that helps to build models of brain cells.

• Resource
• NIF
• 6 years ago - submitted by Maryann Martone

Open source Python platform for machine learning analysis of adaptive immune receptor repertoires. Supported by ELIXIR Norway.

• Resource
• dkNET
• 6 years ago - submitted by Ko-Wei Lin

Resource no longer available. Documented on March 15, 2021. Software tool to identify cross-linked peptides from complex samples and large protein sequence databases by combining isotopically tagged cross-linkers, chromatographic enrichment, targeted proteomics. Reduces search space by upstream candidate peptide search before recombination step.Search engine for cross-linked peptides from complex samples.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on March 15, 2021. Software tool for analysis of cross-linked peptides.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Open source Python platform for machine learning based analysis and classification of adaptive immune receptors and repertoires. Supported by ELIXIR Norway.

• Resource
• SciCrunch
• 6 years ago - submitted by Anh Nguyet Vu

Software tool as statistical calculator that conducts statistical analyses, interprets results, and makes suggestions for presenting results in reports, journal articles and dissertations.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Software Perl toolkit for 10X single cell immunoglobulin repertoires analysis. Uses raw reads or output of Cellranger as input and performs reads quality control, immunoglobulin sequence assembly, sequence annotation, heavy- and light- chain pairing, computing statistics and visualizing.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Haocheng Ye

Software homology based protein function annotation tool that integrates multiple reference data sources. Custom reference data sources can also be added.Accepts as input aminoacids sequence fasta. Customizable and is available on Linux.

• Resource
• SciCrunch
• 6 years ago - submitted by Pedro Queiros

Developed for Allen Reference Atlas and follows terminology from Brain Maps: Structure for the Rat Brain (Swanson, 2004, 2018). The ontology has been subsequently extended and revised to also serve as structure ontology for Allen Mouse Common Coordinate Framework.Defines hierarchical partonomy of anatomical structures of adult mouse brain. At top level, brain is divided into gray matter, fiber tracts and ventricular systems. Gray matter is subdivided into cerebrum, brain stem, and cerebellum, which are themselves organized into subregions in hierarchical tree.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Lydia Ng

3D reference atlas to use with online datasets or as standalone resources. Can be used to analyze, visualize, and integrate multimodal and multiscale datasets in 3D. Intensity and shape population average template brain serves as basis of reference space and coordinate system. Average was constructed at 10 um voxel resolution by interpolating high resolution serial two photon tomography images from young adult C57BL/6J mice. Using multimodal reference data, entire brain was directly parcellated in 3D, labeling every voxel with brain structure from Allen Mouse Reference Atlas Ontology. In the 2017 release, the parcellation spanned 43 isocortical areas and their layers, 329 subcortical gray matter structures, 81 fiber tracts, and 8 ventricular structures.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Lydia Ng

Nonprofit facility providing researchers worldwide with standardized, high-quality primary airway cells from normal and large variety of airway diseased donors with different genetic backgrounds, are essential for improving our understanding of CF and other respiratory diseases and for translational research to develop new therapeutic agents.The PACB is certified by the UBC Office of Biobank Education and Research Biobank Certification Program.

• Resource
• SciCrunch
• 6 years ago - submitted by Edyta Vieth