Curator Dashboard

Software code for simulating diffusion in brain extracellular space images.

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• RRID
• 6 months ago - by Anonymous

Software code for Monte Carlo diffusion simulation. Monte Carlo diffusion with reflecting or absorbing obstacles in 2 and 3D.

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• RRID
• 6 months ago - by Anonymous

Machine-readable framework designed to standardize, organize, and annotate the anatomical structures, developmental stages, and spatial relationships of the human brain during development. It is primarily derived from the Allen Developing Human Brain Atlas (BrainSpan) to provide a structured, hierarchical taxonomy for researchers. Application ontology built by combining ontologised versions of the Allen Institute Developing Human Brain Atlas (DHBA) StructureGraph mapped to Uberon.

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• dkNET
• 6 months ago - submitted by Maryann Martone

Software hepatocyte ploidy identification pipeline on the stereo-cell platform for accurate liver polyploidy classification via fluorescence staining and deep learning tools.

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• 6 months ago - submitted by Jiahui Luo

Miniaturized, hand-held, real-time fluorescence confocal endomicroscope designed for preclinical research, allowing researchers to visualize live tissue at cellular and subcellular levels in vivo. It is primarily used to observe dynamic, 3D biological processes, such as tumor progression, drug interactions, and cell-to-cell interactions in animal models.

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• 6 months ago - by Anonymous

Software R package for performing Piecewise Structural Equation Modeling, designed to fit complex causal networks by breaking them into smaller, manageable "pieces" (individual regressions) rather than using global covariance estimation. Used to analyze complex, direct/indirect ecological and evolutionary data.

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• 6 months ago - submitted by zhu pengjin

Software R package to compute and illustrate the multiple facets of Functional Diversity. Provides graphical functions based on the ggplot library to illustrate FD values through customizable and high-resolution plots of species distribution among functional entities or in a multidimensional space. All functions include internal validation processes to check for errors in data formatting which return detailed error messages. Used to compute a global assessment of functional diversity by gathering computation of alpha and beta functional indices.

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• RRID
• 6 months ago - submitted by zhu pengjin

Provides morphological, life-history, and behavioral trait data for Arctic benthic invertebrate taxa. It facilitates trait-based ecological research in the Arctic by offering standardized, fuzzy-coded data (scores 0-3) on 19 traits (80 categories), with species names synchronized with the World Register of Marine Species (WoRMS).

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• RRID
• 6 months ago - submitted by zhu pengjin

Database on biological traits of polychaetes (bristle worms, Polychaeta: Annelida). It covers information about morphological, behavioural, reproductive and larval characteristics of polychaete taxa which has been collected from the literature.

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• RRID
• 6 months ago - submitted by zhu pengjin

Database developed by the Marine Life Information Network (MarLIN) in collaboration with the Marine Biological Association (MBA) and Plymouth Marine Laboratory. It provides detailed, searchable, and downloadable functional trait information on marine benthic invertebrates and plants to support ecological research. The database emphasizes species found around the coasts and seas of the British Isles.

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• RRID
• 6 months ago - submitted by zhu pengjin

CATAMI web site provides a location of the deposit and access of various underwater imagery, including data from Baited Remote Underwater Video (BRUV), Autonomous Underwater Vehicles (AUV), Diver Operated Video (DOV) and Towed Imagery (TI). CATAMI Classification Scheme provides standardised vocabulary for identifying benthic biota and substrata from underwater imagery.

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• RRID
• 6 months ago - submitted by zhu pengjin

Web interactive digital tool for tracking the health of vital reef ecosystems all around the world. Reef Life Survey program uses scientists and citizen scuba divers to survey fishes on coral and rock reefs throughout the world. Marine life monitoring programm.

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• 6 months ago - submitted by zhu pengjin

Windows-based software (PC use only) that provides a tool for the determination of coral cover using transect photographs. A specified number of spatially random points are distributed on a transect image and the features underlying the points are user-identified. Coverage statistics are then calculated and the results sent to Excel spreadsheets automatically. CPCe can be used for image calibration and area analysis of benthic features. Excel sheets are automatically generated to summarize the area calculations for each image.

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• RRID
• 6 months ago - submitted by zhu pengjin

Software set of tools useful in the analysis of benthic terrain. Includes tools for geomorphology and classification.

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• RRID
• 6 months ago - submitted by zhu pengjin

Software open-source platform for integrated analysis of spatial transcriptomics and metabolomics data. It integrates spatial pattern recognition, differential comparison, network construction, and functional annotation into a unified workflow. Enables to explore gene-metabolite co-regulation mechanisms through an intuitive web interface, revealing spatial heterogeneity in tissue development and disease progression.

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• 6 months ago - submitted by haoke deng

SBSR core consists of the Protein Purification unit and the Structure Determination unit. Protein Purification unit produces homogeneous, high-quality proteins well suited for downstream biophysical studies and structure determination. Structure Determination unit employs X-ray crystallography, Cryo-EM, and advanced AI-assisted analytical tools for structure determination and imaging.

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• SciCrunch
• 6 months ago - submitted by Edyta Vieth

Fully automated high-content imaging platform that uses cyclic immunofluorescence to enable high-plex spatial profiling of hundreds of protein markers and dozens of RNAs on the same tissue section, accelerating spatial biology and multiomics research workflows.

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• 6 months ago - by Anonymous

Core provides access to advanced imaging and analytical instrumentation, expert technical support, hands-on training, and collaborative project support. Services include high-resolution imaging through Scanning Electron Microscopy (SEM) and Transmission Electron Microscopy (TEM) to examine surface features, internal structures, microstructures, nanoparticles, biological specimens, and engineered materials at micro- to nanoscale resolution; X-Ray Diffraction (XRD) for phase determination and crystallographic analysis; Atomic Force Microscopy (AFM) for nanoscale surface characterization. Provides solid analyzer and rheometer for evaluating material properties and behavior. Specialized sample preparation services include polishing, ultramicrotomy, sputter coating, and other preparation techniques needed for microscopy and materials analysis. Individualized, non-credit instruction is available for instrument operation and sample prep techniques. Offers expert support with sample preparation, data acquisition, sample analysis, troubleshooting, and preparation of results for reports, proposals, presentations, and publications.

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• RRID
• 6 months ago - submitted by Rooban Venkatesh K G Thirumalai

Micro X-ray Computed Tomography Shared Research Facility (XCT-SRF) provides access to an X-ray microscope and micro-CT instrument, and expertise in experiment planning, sample preparation, and data analysis and visualisation. The facility is capable of 3D imaging and analysing a wide range of material samples, with a focus on supporting research in healthcare, manufacturing, and energy applications.

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• 6 months ago - submitted by Julia Behnsen

Instrument to increase the rate of tissue clearing. Provides optimal imaging and staining quality. Delipidates for best antibody diffusion and minimal light scatter, and ensures maximum preservation of fluorescent protein signals with optimized buffers that maintain pH. Nanoporous membranes prevent common issues including tissue damage, contamination, browning, black precipitates, and deformation.

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• RRID
• 6 months ago - submitted by Anita Bandrowski