Curator Dashboard

Behavioral two photon imaging system. Includes two photon scanning microscope, software and virtual reality set up. Used for chronic two photon imaging in mice exploring virtual environment. Tool in neuroscience to allow for chronic measurement of activity of genetically identified cells during behavior.

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• RRID-Legacy
• 5 years ago - submitted by Felix Widmer

Open source game engine and framework for 3D rendering and game development for Python and C++ programs. Graphics engine and programming environment to support everything from real time graphics applications to development of high end virtual reality theme park attractions or video games.

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• RRID-Legacy
• 5 years ago - submitted by Felix Widmer

Portal for cross sectional study where population based sample of adult cancer patients were recruited for mailed survey (with telephone follow-up of non-responders) to evaluate equivalence of PROMIS measures across socio-demographic and clinical sub-groups.

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• RRID-Legacy
• 5 years ago - by Anonymous

Data repository for Friedrich Miescher Institute for Biomedical Research in areas of epigenetics, quantitative biology, and neurobiology.

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• RRID-Legacy
• 5 years ago - submitted by Felix Widmer

Software package for image processing for MATLAB. Used for processing of calcium imaging data.

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• RRID-Legacy
• 5 years ago - submitted by Felix Widmer

Software LabView package for two-photon calcium imaging acquisition. Used for controlling two-photon microscope and preprocessing of calcium imaging data.

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• RRID-Legacy
• 5 years ago - submitted by Felix Widmer

Web based portal using web based tools for analyzing real-time qPCR or next-generation sequencing data. NGS modules support analysis of QIAGEN's QIAseq NGS library kits and target enrichment panels.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software tool to create realistic networks of neurons, synapses placed using touch detection between axons and dendrites.Used to create detailed network of connected neurons, where connectivity is derived from reconstructed neuronal morphologies as well as from more qualitative experimental knowledge. Supports creation of network with connectivity based on touch detection.

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• RRID-Legacy
• 5 years ago - by Anonymous

Provides short training courses to in service public health practitioners and professionals.Offers teaching, research, and policy advice in public health in Pakistan.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Matchmaking platform for clinicians and scientists to facilitate collaborative research on rare and undiagnosed diseases. Used for collaborative projects that advance scientific knowledge and patient care. Currently supports Mouse, Rat, Frog, Zebrafish, Fruit Fly, Nematode Worm, Budding Yeast, Fission Yeast, and E. coli. Used to identify human ortholog of genes in these model organisms and vice versa. Scientists who register in ModelMatcher are asked to classify their genes of interest into Public or Restricted categories.The Match feature will allow Clinicians to obtain information on genes that Scientists classify as both Public and Restricted.

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• dkNET
• 5 years ago - submitted by Maryann Martone

Facility that provides CRISPR services and expertise to facilitate study of gene function. Services include project consultation, sgRNA design and cloning, lentivirus production, custom CRISPR cell line generation and genome wide CRISPR screen.

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• RRID-Legacy
• 5 years ago - by Anonymous

Hood holds any animal lab chambers while continuously sweeping all experiment related off gases away.Used to capture and exhaust gases or vapors which escape from animal chamber and directs them to safe location.Helps to control animal odor in the lab. Available in standard and customized dimensions.

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• SciCrunch
• 5 years ago - submitted by Ray Gould

Parts per million limit controller primarily used for assuring consistent and acceptable off gas levels in variety of animal enclosures.

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• SciCrunch
• 5 years ago - submitted by Ray Gould

Software tool to measure area of invading spheroid in 3D cell invasion assay. Can also count and measure area of nuclei within spheroid.

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• SciCrunch
• 5 years ago - submitted by Volker Baecker

Isolator that provides physiologically relevant oxygen as well as low contamination risk cell incubation and handling. Subset of Cytocentric Platform designed for processing and producing cells in compliance with regulatory GMPs. Includes glovebox and tanked gases for atmosphere for controllable humidity and microbial risks. Modular and customizable.

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• SciCrunch
• 5 years ago - submitted by Ray Gould

Software to create and edit sample sheet in order to perform next generation sequencing on Illumina paltforms. Used for MiniSeq, MiSeq, NextSeq 500/550, HiSeq, and NovaSeq 6000 Systems.

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• RRID-Legacy
• 5 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on December 11, 2025. Interdisciplinary team of engineers and scientists, representing fields of physics, mathematics, and computer science, that combine their expertise in areas such as microscopy, lasers, optoelectronics, applied mathematics, image and signal processing, computer graphics, computer vision, statistics, software engineering, and biophysics, to develop imaging approaches for cell biology. Pioneers in high-resolution 3D imaging using wide-field fluorescence microscopy together with digital image deconvolution, and image visualization and quantitative analysis techniques, especially as applied to statistical analysis of images to determine co-localization of fluorescence markers inside cells.Research includes development and application of light microscopy and imaging in cell biology and biophysics.Developed TESM microscope that combines Total internal reflection fluorescence (TIRF) with Epi-fluorescence Structured illumination to provide new views of trafficking in near plasma membrane domain of cells.Provides custom-built, ultra-high-speed microscope system for imaging dynamics of intracellular calcium channel events, called calcium sparks, that are being found to regulate expanding array of cellular processes. Provides two photon fluorescence microscope for looking deep inside tissue, completing range from molecule to organism. Areas of ongoing technology research include high-speed, high-resolution imaging of live cells and tissues, novel image processing approaches, high-performance computing, and computer graphics.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Provides consultation and training in TEM imaging of biological, chemical, and materials science samples.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Provides Penn State research community with modern, centralized facility for housing, breeding and performing experiments with zebrafish.Provides physical and intellectual infrastructure for investigators whose research can benefit from use of zebrafish as model system.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

MRI and NMR magnetic resonance imaging facility for animal and human research, providing MRI methodologies and expertise for in vivo studies Laboratory space includes biochemical, electronic and surgical suites, and fully equipped machine shop with (2) 3D printers. MRI Core facility has two MRI systems and EEG MRI-compatible system.3T Siemens PRISMA-Fit scanner equipped with True 2 Channel Tx and 64 Channel Rx. The latest RF coil set including a 64 Channel head coil and software packages with full clinical capability.7T Biospec 70/20 as small animal imaging system (Bruker Biospin, Ettlingen, Germany). Latest Hardware and Software. Avance NEO with Paravision 360. Full sensory fMRI stimulation systems:SenSaVue System for visual and auditory stimulation (Invivo Corp, FL, USA), which includes an LCD visual display, audio system, button response unit and software (E-Prime) for paradigm creation, patient management, protocol planning, precise delivery of brain stimulation, and behavioral analysis.ETT Olfactometer with full-programmable 6 independent channels for odor and trigeminal stimulation (ETT, LLC, Hershey, PA).Olfact Smell Test System (Osmic Enterprises, Inc., Cincinnati, OH) is a computerized instrument to test the smell functions of human subjects. The smell functions that can be tested are odor threshold, odor identification, and odor memory.ETT Gustatometer with full-programmable 7 independent channels for taste stimulation (ETT,LLC, Hershey, PA) Eye Link 1000 Plus system via SR Research: The EyeLink 1000 Plus Host PC performs real-time eye tracking at 250, 500,1000, or 2000 samples per second while computing true gaze position on the display viewed by the participant. The Host PC also performs on-line detection and analysis of eye-motion events such as saccades, blinks, and fixations. In addition to the sample data, these events are stored in a data file on the Host PC. They can be sent through the Ethernet link to the Display PC with a minimal delay or output as analog signals (if the optional analog/digital I/O card is installed). From the Host PC, the operator performs participant setup, monitors their performance, and can communicate with applications running on a Display PC.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth