Curator Dashboard

Software tool for analysis of mass spectrometry imaging data implemented in Galaxy framework. Provides options to analyze mass spectrometry imaging data in imzML file format, including quality control, visualization, preprocessing, statistical analysis, image co-registration and feature identification.Galaxy docker container for mass spectrometry imaging.

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• SciCrunch
• 7 years ago - submitted by Melanie Föll

DE,Full body high-definition imaging can provide high-quality imaging and clearly display the detailed structure of anatomical parts. The increase in low-density ratio enhances the imaging clarity of soft tissues, enabling perfect imaging of low-density tissues with a diameter of 2mm.

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• RRID
• 2 years ago - submitted by yy wei

HD Community BioRepository is a secure, centralized repository that stores and distributes quality-controlled, reliable research reagents. This repository currently provides access to huntingtin DNAs, polyclonal antibodies (with antigenic peptides) and cell lines. Monoclonal antibodies and hybridomas will be added in the near future. Working together with the Coriell Institute for Medical Research, CHDI Foundation established this secure, centralized repository to store and distribute quality-controlled and reliable research reagents to give research scientists unobstructed access to biomaterials and to support the discovery of therapeutics that will slow or prevent Huntington's disease. Huntington's disease is a fatal, familial disease caused by a mutation in the huntingtin gene. The mutation causes brain cells to malfunction, resulting in cognitive and physical impairments that, over the course of the disease, isolate and constrain the individual. There is currently no way to stop or reverse the course of Huntington's disease. Researchers currently not collaborating with CHDI Foundation may request these Huntington's disease resources from the HD Community BioRepository through the website; CHDI collaborators are asked to contact Mithra Mahmoudi at CHDI Management. Materials will be sent after completing a simple online MTA. Recipients are asked to cover the costs of shipping and handling. Persons with Huntington's disease bioresources interested in making them available to the research community through the HD Community BioRepository should also contact CHDI Management.

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• SciCrunch
• 16 years ago - by Anonymous

Portal for visualization and analysis of multi omic data in public and private domains. Enables upload, visualization and analysis of scRNA-seq data.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Ecosystems Laboratory provides bench space, laboratory supplies, chemicals, sample preparation equipment, and sample storage space to enhance and facilitate research within Stanford University community.

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• RRID
• 2 years ago - by Anonymous

Encourages and facilitates brain tissue donation for use in the best scientific studies to better understand the biological basis of autism down to the cellular and molecular levels and through that understanding bring about the development of effective interventions for those affected by autism spectrum disorders. To ensure the best co-ordinated use of brain tissue, the UK Brain Bank for Autism works in collaboration with the Autism Tissue Program in the US and shares the same Tissue Advisory board. The Brain Bank for Autism & Related Developmental Research was established in 2009. It is an initiative to develop a similar program in the UK to the Autism Tissue Program, which has been developed in the US since 1998. Our Brain Bank is the first extension outside the US of the Autism Tissue Program and is integrated with it. The Brain Bank is based at Oxford University, where it forms part of the Thomas Willis Oxford Brain Collection. It operates in accordance with all UK legal and ethical requirements. The donation of post-mortem brain tissue for this research program is of fundamental importance to our understanding of the causes of autism and to help us develop more effective diagnostic measures and interventions. A separate brain bank for autism is necessary because we need to understand how, in autism, the brain develops over time and how the brain functions as a whole. However, our Brain Bank will promote close cooperation across all relevant brain banks in order to take the research forward. Our research focuses on: * people within the autism spectrum or their family members * people not affected by autism but who are affected by epilepsy * individuals without autism or epilepsy.

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• SciCrunch
• 16 years ago - by Anonymous

Authoritative source of official names for mouse genes, alleles, and strains. Nomenclature follows rules and guidelines established by International Committee on Standardized Genetic Nomenclature for Mice.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Software signal processing and spectral analysis toolbox designed for local field potential recordings.

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• RRID
• 2 years ago - submitted by Mark Laubach

An R Package to Study Gene Spatial Neighbourhoods with Multi-Omics Annotations.

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• SciCrunch
• 13 years ago - by Anonymous

Nonhuman Primate reference transcriptome resource consisting of deep sequencing complete transcriptomes (RNA-seq) from multiple NHP species.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Facility for computed tomography (3D) imaging of objects in the Field Museum and part of the Museum’s Core Lab Group. Includes two North Star Imaging (NSI) XCT scanners. The larger of the two scanners is an X5000 with a dual tube setup: one 450kV mini-focus tube, and one 225kV micro-focus tube. This scanner can house samples up to 500lbs and 1.2m in longest dimension, and has excellent penetrating power for imaging dense samples like fossils and meteorites. The smaller scanner is an X25 with a 150kV Hamamatsu tube, which is excellent for imaging smaller and/or less dense samples in extremely high resolution, such as small animal skeletons. In addition to the scanners, the lab is equipped with two high-powered computers for post-scan data processing. Available software includes NSI’s suite of inspection and reconstruction software, VG Studio, ORS Dragonfly, 3DSlicer, Meshlab, and Blender.

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• RRID
• 1 year ago - submitted by Edyta Vieth

A national nonprofit organization dedicated to accelerating the cure of MS by facilitating research that determines the causes and mechanisms of MS. Our main effort is the creation of a large-scale, multidisciplinary MS Repository of blood samples and data from people with MS and matched controls. We make these samples available to researchers investigating the causes of MS and other demyelinating diseases. In exchange for access to the repository, researchers agree to return the data they generate from the samples so that results from disparate experiments can be combined. We are also developing a Cure Map to establish and document what is known and what is not known about the causes of MS. From the Cure Map, Accelerated Cure Project will facilitate the research most likely to reveal the causes of MS in the shortest time through use of our MS Repository.

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• SciCrunch
• 16 years ago - by Anonymous

Software tool to visualize and analyze transcriptomics data and transcriptomic cell types for mouse and human, all directly in web browser. To explore gene expression heatmap across cell types in datasets, search for genes of interest, explore tSNE visualization, colored by cell types or expression of genes of interest, visualize dataset’s sampling strategy to see how cells and nuclei were sampled across brain areas, cortical layer, and other dimensions, find cell type of interest in one visualization and see its characteristics in different visualization.Used for Allen Brain Map Cell Types Database to Browse Data: Human - Multiple Cortical Areas, and Mouse - Cortex and Hippocampus.

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• RRID-Legacy
• 7 years ago - submitted by Edyta Vieth

Core provides custom built ad hoc optical microscopy solutions, advanced image analysis, and consultation services to researchers across the Penn campus and beyond.

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• SciCrunch
• 1 year ago - submitted by Edyta Vieth

The Alaska Brain Injury Network, Inc (ABIN) is a non-profit organization dedicated to Alaskans whose lives have been changed by brain injury. The ABIN mission is to educate, plan, coordinate, and advocate for services for the survivors of traumatic brain injury and their families. ABIN''s Board of 18 directors represents all regions of Alaska, and at least 50 percent are TBI survivors or family members. ABIN has two primary functions: TBI Advisory Board and TBI Resource Navigation Agency. Advisory Board -Visit both urban and rural communities, and listen to the stories that the public shares about the issues facing Alaskans with brain injuries. -Collaborate with our partner boards to affect changes in policies to improve programs and services. -Advocate for safety legislation, in-state brain injury rehabilitation, and TBI Waiver services. -Bring TBI professional training to Alaska. -Conduct ''needs assessment'' surveys of survivors, family members, and health workers. -Maintain up to date information on emerging issues identified through callers, public testimony, and the media. Resource Navigation (Information and Referral) -Respond to requests for assistance, information, resources, and referral. -Distribute a brain injury resource directory with statewide and local resources and supports available to individuals, families, friends, professionals, caregivers and the general public. -Work to establish a TBI hotline and brain injury support groups. -Distribute educational and informational resources to the public.

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• SciCrunch
• 16 years ago - by Anonymous

Software repository for DOE funded software tools. DOE software services platform and search tool for DOE-funded code – DOE CODE. Provides functionality for collaboration, archiving, and discovery of scientific and business software. DOE CODE replaces OSTI old software center, Energy Science and Technology Software Center (ESTSC).US Department of Energy new open source software services and search platform for sharing research software between national institutes.

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• SciCrunch
• 7 years ago - submitted by Anita Bandrowski

Core provides access to functional, up-to-date equipment for flow cytometric analysis and cell sorting, histological samples preparation, and single cell RNA sequencing which is essential for all researchers in immunology, infectious disease, and cell biology and is highly useful for scientists in other related fields.

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• SciCrunch
• 1 year ago - submitted by Edyta Vieth

LifeCenter Northwest is one of 58 federally designated nonprofit organ procurement organizations (OPO) in the United States. LifeCenter Northwest works together with families, medical professionals, and communities in Alaska, Montana, North Idaho, and Washington to save lives through organ and tissue donation. LifeCenter Northwest provides the following services: * Hospital Development ** support of donor families throughout and after the donation process ** development of strong relationships between hospitals and LifeCenter Northwest ** helping hospitals stay compliant with federal and state regulations ** ongoing education of hospital staff on donation laws and programs * Organ Recovery Services ** on-site referral response to hospitals ** evaluation of patient medical suitability for donation ** management of patient care through the allocation and recovery of organs ** placement of organs, working with the United Network for Organ Sharing (UNOS) ** coordination of transplant team transportation and arrival at donor hospitals ** surgical recovery and transportation of organs * Tissue Recovery Services ** telephone referral response to hospitals ** evaluation of patient medical suitability for donation ** surgical recovery and transportation of tissues

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• SciCrunch
• 16 years ago - by Anonymous

Relational database management system contained in C library. SQLite is not client server database engine but it is embedded into the end program.

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• RRID-Legacy
• 7 years ago - submitted by Joe Menke

Core offers researchers multi laser and multi color flow cytometry sorters and analyzers, including spectral and imaging flow cytometers.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth