Curator Dashboard

Free cloud platform for secure neuroscience data analysis. Allows to manage data, processing and results, sharing projects privately with collaborators or publicly with brainlife.io community.Promotes engagement and education in reproducible neuroscience.You can share your neuroimaging data publicly or privately. Data on brainlife.io is organized as Datatypes to allow interoperability between Apps.

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• NIF
• 6 years ago - submitted by Maryann Martone

Registration toolbox written in pyTorch. Supports various image registration methods. Focuses on nonparametric registration approaches including stationary velocity fields and large discplacement diffeomorphic metric mapping models though simple affine registration is also possible. Allows for rapid prototyping of new image registration approaches and similarity measures.

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• NIF
• 6 years ago - submitted by Maryann Martone

Software R package for fast preranked gene set enrichment analysis. Allows to make more permutations and get more fine grained p-values, which allows to use accurate stantard approaches to multiple hypothesis correction.

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• RRID-Legacy
• 6 years ago - by Anonymous

Portal enables browsing, searching, and analysis of human genetic information linked to common metabolic diseases and traits, while protecting integrity and confidentiality of underlying data. Aggregates and analyzes genetic association results, epigenomic annotations, and results of computational prediction methods to provide data, visualizations, and tools in open access portal.

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• dkNET
• 6 years ago - submitted by Ko-Wei Lin

Portal for providing data and tools to promote understanding and treatment of type 1 diabetes and its complications.Enables browsing, searching, and analysis of human genetic information linked to type 1 diabetes and related traits, while protecting integrity and confidentiality of underlying data.Represents effort to coordinate collection and deposition of genomic and epigenomic data related to type 1 diabetes and its complications.

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• dkNET
• 6 years ago - submitted by Ko-Wei Lin

Software tool as plugin powered hybrid computing platform for deploying deep learning applications such as advanced image analysis tools. Runs on mobile and desktop environment cross different operating systems, can run in the browser, localhost, remote and cloud servers.

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• RRID-Legacy
• 6 years ago - submitted by Wei OUYANG

Software tool to calculate number of mapped exonic non duplicate reads in bam file containing RNA-Seq data.

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• SciCrunch
• 6 years ago - by Anonymous

Web tool for systematic reference data collection in land cover and use applications.Open source software tool for land monitoring. Systematic reference data collection tool for land cover and land use applications. Satellite image viewing and interpretation system developed by SERVIR joint efforts between NASA, FAO, US Forest Service and Google.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software toolkit for rapid development of cloud native intelligent data pipelines for scientific data streams. Hierarchical approach to acquisition, analysis, and interpretation of image data. Developed in the project Hierarchical Analysis of Spatial and Temporal Data.

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• SciCrunch
• 6 years ago - submitted by Andreas Hellander

Software tool for detecting automatically generated academic papers. Discovers text that has been generated with SCIgen and other fake paper generators like Mathgen and Physgen. Provides on open source version of the scigen detector.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Field scanning electron microscope with analytical specimen chamber with choice of optional detectors and accessories. It has 5-axes motorised cartesian stage can handle multiple smaller specimens simultaneously. It can image bulky or irregular shaped specimens.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

PALM MicroBeam scanning electron microscope for isolating uncontaminated source material simple.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

ZEISS SIGMA VP field emission scanning electron microscope (FE-SEM) for imaging of non-conducting samples. It images of bacteria, cells, plants and organisms. Uses ATLAS software and can be combined with 3View technology from Gatan Inc.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Used to digitize specimens with the Axio Scan.Z1 slide scanner to create high-quality virtual slides. Axio Scan.Z1 tackles the most demanding virtual microscopy research tasks as easily as it handles your routine work. The software module ZEN slidescan is designed specifically for the workflow of capturing virtual slides, while ZEN image analysis tools prepare your data accurately. Organize your virtual slides with ZEN browser, the web-based database, then view your data from any location using any operating system , or share virtual microscopy images online with colleagues and organize your projects, even when you are on the go.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Laser scanning microscope for the high resolution imaging of biological or material samples.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Fully enclosed laser scanning confocal imaging microscopefor heating and environmental control with media perfusion capabilities and CO2 control. It can be used for Live Cell Imaging, FRET and Anisotropy, FRAP and FLIP, FCS, Photoactivation/ -conversion., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Optical stereomicroscope with 7.7:1 zoom range (pancratic system 0.65x to 5.0x) zooms in continuously or with click stop. It has an object field size of 35mm, with an 0.3x attachment lens system permitting object fields of up to 118mm to be viewed.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Confocal microscope that acquires the X dimension simultaneously on a line CCD detector while scanning only in the Y dimension. This system is equipped with two fluorescence detectors and 4 lasers lines at 405nm, 488nm, 561nm and 633nm. It is capable of scanning over 120 FPS for a large field of view.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Laser Scanning Microscopes (LSM) for high resolution imaging of biological or material samples. The compact scanning module can be fitted to an inverted (Axio Observer.Z1 RP or SP) or upright (Axio Imager.Z2, Axio Imager.M2 or Axio Examiner) microscope.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Industrial X ray and CT inspection system for broad applications in foundries, R&D, laboratories, universities, and educational institutions. system delivers image quality with digital flat panel detector and radioscopy.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth