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Laboratory testing tool used to measure anxiety-like behavior in rodents like mice and rats.
Behavioral testing apparatus used to assess anxiety like behavior, evaluate pharmacological agents, and study neurological responses in laboratory rats and mice.
Behavioral testing system used to measure the rewarding or aversive effects of drugs, natural rewards, or stress in laboratory rodents. It relies on two or three distinct compartments with different wall patterns, lights, and floor textures (such as wire mesh versus grid rods).
Device is used to test social behavior, social memory, and preference for social novelty in rodents like mice and rats.
Behavioral testing apparatus used in neuroscience and psychology laboratories to measure spatial learning, memory, and cognitive flexibility in rodents like mice and rats.
Device used to test spatial learning, reference memory, and navigational skills in rodents. It measures how well mice or rats use external visual room cues to find a hidden, submerged escape platform in an opaque pool of water.
Core provides access, training and service scans for a range of state-of-the-art pre-clinical imaging modalities and high-resolution NMR spectroscopy for anatomy, function, and metabolism. Modalities include bioluminescence, fluorescence, ultrasound, MRI, PET, SPECT and CT, photoacoustic imaging, and image-guided X-ray irradiation.
Software R package for the analysis of kinetic phenotypic screens read as growth curves in 96-well microplates. Implements a benchmarked, simulation-validated pipeline that goes from raw OD600 trajectories to a hit list: plate-level quality control (control CV, Z'-factor, SSMD), within-plate positional correction by median polish (B-score), normalisation to the median of in-plate controls, and hit calling requiring convergence between per-plate ANOVA and a library-wide linear mixed model with Benjamini-Hochberg FDR control. Also extracts kinetic parameters (maximum specific growth rate, maximum OD, lag time) and supports functional principal component analysis and Monte Carlo validation of pipeline operating characteristics.
Software R package to integrate and query microRNA (miRNA) data. It allows retrieve and analyze validated and predicted miRNA-target interactions, as well as their associations with various diseases and drugs.
Software repository that contains curated cross‑reference dataset that links official ICTV virus taxa to their corresponding NCBI Taxonomy identifiers using the SSSOM (Simple Standard for Sharing Ontology Mappings) format. It provides machine‑readable, standardized mappings that enable interoperability between the ICTV taxonomy and widely used NCBI Taxonomy resources.
Structured, machine‑readable interface that exposes the complete ICTV virus taxonomy as an OWL/RDF ontology. It provides programmatic access to official virus taxa, their hierarchical relationships, synonyms, historical names, and metadata, enabling automated reasoning, name resolution, and integration of ICTV taxonomy into bioinformatics tools and databases.
Web tool that uses the ICTV Ontology API to translate any virus name—current, historical, informal, or deprecated—into its official, up‑to‑date taxonomic position within the ICTV (International Committee on Taxonomy of Viruses) taxonomy, the globally recognized standard for virus classification.
Multidisciplinary public university with eight faculties located in the city of Turku in southwestern Finland. The university also has campuses in Rauma and Pori and research stations in Kevo and Själö.
Software tool to perform standard analysis of colony formation assays conducted in 6- to 24-well dishes. ImageJ-plugin that is optimized to perform standard analysis of colony formation assays conducted in 6- to 24-well dishes. The plugin processes each well individually and determines not the colony number, but the area of the well covered with cells, also taking the intensity into account.
Software R package offers a panel of functions for kinase activity inference on an input phosphoproteomics dataset using the Kinase-Substrate Enrichment Analysis (KSEA) method originally described by Casado et al.
Automated platform used in behavioral neuroscience to track and analyze the movements and behaviors of lab animals, such as mice and rats. Standardizes experiments like the Elevated Plus Maze, Open Field, Barnes Maze, and Fear Conditioning. Tracks whole-body movement, distance traveled, freezing/immobility, and zone entries. Connects to external devices like food dispensers, shockers, and lasers to trigger automated responses based on the animal's actions.
Norway's largest medical institution and Scandinavia’s largest hospital, employing over 20,000 people and serving around 2.7 million residents. Affiliated with the University of Oslo, it combines local, regional, and national emergency services with pioneering biomedical research and education.
Core provides services, including sample analysis and cell sorting, as well as instrumentation, software, and technical expertise/advice for a variety of flow cytometric protocols. Training is available to enable users to run the cytometers themselves.
Core provides centralized administrative, operational, fiscal, regulatory, and communication support for the COBRE on Opioids and Overdose. Services include project management, pilot project administration, investigator support, grant and IRB assistance, meeting and event coordination, mentorship program administration, reporting, dissemination support, and coordination across COBRE cores and leadership.
Core provides fluorescence imaging services for HUN-REN BRC researchers, for collaborators from the SZTE and other Hungarian institutes, and for EuroBioImaging members. The available equipment consists of confocal laser scanning microscopes, fluorescence and stereo microscopes. Our expertise, image processing software collection and the available courses are supporting the efficient research.