Curator Dashboard

ImageJ macro to detect, mark and count electron dense markers like goldgrains or quantum dots in electron micrographs.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Software R package for dissecting cancer evolution from multi region derived tumor biopsies via somatic mutations. Used for characterizing cancer genomic ITH and inferring history of tumor evolution via implementation of well established computational and statistical methods.

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• SciCrunch
• 6 years ago - submitted by XIN WANG

Portal to build, train and deploy state of the art models powered by reference open source in natural language processing.

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• NIF
• 6 years ago - submitted by Maryann Martone

Educational software that implements Analytic Hierarchy Process and Analytic Network Process. Provides tools to create and manage AHP and ANP models, enter your judgments, get results and perform sensitivity analysis on results. Provides support for complex, multilevel Benefits Opportunities Costs Risks models.

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• RRID-Legacy
• 6 years ago - by Anonymous

Tucsen camera image acquisition, managing and processing software by Tucsen Photonics Co., Ltd. Professional imaging software application developed by Tucsen for full control of Tucsen cameras.Tucsen continually upgrades TCapture.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Software package for quantitative analysis of PET/CT studies. Quantitative oncology molecular analysis suite. Allows for DICOM input of both PET and CT data. It includes several image processing steps such as rebinning/resampling, cropping and smoothing. After loading and processing PET/CT images, lesions can be delineated using a range of segmentation.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Viewer for DNA Methylation Atlas of Mouse Brain at Single Cell Resolution. Browser to interactively explore single cell methylome dataset including exploration of methylation diversity of one gene at single-cell or cell-type level, exploration of cell type composition of adult mouse brain dissection regions and anatomical structures, explorartion of spatial distribution and methylation signature genes of one cell type.

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• NIF
• 6 years ago - submitted by Maryann Martone

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• SciCrunch
• 6 years ago - submitted by xzfdsg fghdfghdgfh

Portal for scRNA-seq study. Includes dendrogram visualization and clustering of all cells in scRNA-seq study as well as interactive filtered views for cell type, gene and/or donor group.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Anh Nguyet Vu

Software tool to enable BLAST to identify homologous gene sequences. Graph based algorithm, which automatically filters High Scoring Pairs into well defined groups, each representing candidate gene in target genome.Used for identifying homologous sequences. Used for extracting relevant HSPs that represent candidate homologous genes from the entire HSP report.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Software package for DNA methylation analysis. Used for context-wise, gene-wise, bin-wise, region-wise and sample-wise analysis and visualizations. Used to improve precision of heterozygous SNV calls and supports allele-specific methylation detection and visualization in bisulfite-sequencing data.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software tool as simulation framework for testing association of genomic intervals. Used for estimating significance of overlap between multiple sets of genomic intervals. Estimates statistical significance based on simulation and controls for multiple tests using false discovery rate.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software tool as versatile aligning pipeline for bisulfite sequencing data. Used for mapping bisulfite sequencing data and generating DNA methylomes. Improves mappability over existing aligners by using local alignment. Maps reads from RRBS library by building special indexes with improved efficiency and accuracy. Provides additional function for filtering out reads with incomplete bisulfite conversion, which is useful in minimizing overestimation of DNA methylation levels.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software package for analysing small RNA data. Software suite of tools for analyzing miRNAs and sRNAs. Performs analysis of single or multiple sample small RNA datasets from both plants and animals.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software pipeline to identify MITEs as well as other small Class 2 non autonomous Transposable Elements from genomic DNA data sets. Used for discovering miniature inverted repeat transposable elements from genomic sequences. Can search large genomic data sets including whole genome sequences.

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• RRID-Legacy
• 6 years ago - by Anonymous

Automated software resource that combines histologically cleared volumes with connectivity atlases and MRI, enabling analysis of histological features across multiple fiber tracts and networks, and their correlation with in vivo biomarkers.Multimodal image registration and connectivity analysis for integration of connectomic data from microscopy to MRI. Open source pipeline for automated registration of mice clarity data to Allen reference atlas, segmentation and feature extraction of mice clarity data in 3D, registration of mice multimodal imaging data to Allen reference atlas, tract or label specific connectivity analysis based on Allen connectivity atlas,comparison of diffusion tensort imaging/tractography, virus tracing using CLARITY and Allen connectivity atlas, statistical analysis of CLARITY and Imaging data, atlas generation and label manipulation.

• Resource
• dkNET
• 6 years ago - submitted by Maryann Martone

Web tool for prediction of full length Long Terminal Repeat retrotransposons. Used for finding LTR retrotransposons in genome sequences.Given DNA sequences, it predicts locations and structure of full length LTR retrotransposons accurately by considering common structural features.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software provides user interface for data acquisition on MACSQuant Analyzer Flow Cytometer Instrument and also works as stand alone application for flow cytometry data analysis.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software tool for flow cytometry data analysis by Miltenyi Biotec.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software tool to detect differential alternative splicing events from RNA-Seq data. Calculates P value and false discovery rate that difference in isoform ratio of gene between two conditions exceeds given user defined threshold. Can automatically detect and analyze alternative splicing events corresponding to all major types of alternative splicing patterns. Handles replicate RNA-Seq data from both paired and unpaired study design.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski