Curator Dashboard

Opera Phenix Plus system for high throughput high content assays, phenotypic screening, assays using complex disease models, such as live cells, primary cells and microtissues, and fast response assays like calcium flux or cardiomyocyte beating.Optical design lets you generate information through confocal imaging and at higher throughput through simultaneous acquisition. Delivers speed without compromising sensitivity. Uses Harmony High Content Imaging and Analysis Software to quantify complex cellular phenotypes. Harmony software is designed for PerkinElmer high content screening systems.

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• RRID-Legacy
• 5 years ago - submitted by Anita Bandrowski

Data, code, and notebooks for replicating analyses reported in Rogers et al., Evidence for deep, distributed and dynamic semantic code in human ventral anterior temporal cortex.

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• RRID-Legacy
• 5 years ago - submitted by Timothy Rogers

System can simultaneously run up to four 3072 reaction QuantStudio 12K Flex OpenArray plates in about four hours. When combined with the QuantStudio 12K Flex OpenArray AccuFill System, can produce up to 110000 data points or more in 8 hour day. Has touch screen interface and comprehensive software analysis tools for gene expression, genotyping, and digital PCR increase productivity. Has five interchangable block formats including: OpenArray plate, TaqMan Array card, 384-well, and 96-well (0.1 and 0.2 mL).

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• RRID-Legacy
• 5 years ago - by Anonymous

Thermocycles with added control of VeriFlex technology, with six independent temperature blocks that provide precise control over PCR optimization. Color touch screen simplifies setup and use. Optional setups for fast or standard PCR methods provide with flexibility to shorten your PCR cycling times. Equipped with astandard 0.2 mL block configuration.Will be discontinued on December 31, 2021.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software supports QuantStudio12K Flex Real Time PCR System to open and analyze experiments. Enables to set up experiments, send experiments to instrument, control thermal cycling process in instrument, collect data and analyze collected data.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software tool to quantify relative gene expression across large number of genes and samples. Allows to analyze gene expression data on any current Applied Biosystems real time PCR instrument.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software R package provides functions for facilitating survival analysis and visualization.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software tool for mass screening of contigs for antimicrobial and virulence genes. Mass screening of contigs for antimicrobial resistance or virulence genes. It comes bundled with multiple databases: NCBI, CARD, ARG-ANNOT, Resfinder, MEGARES, EcOH, PlasmidFinder, Ecoli_VF and VFDB.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software tool for Bayesian inference of ancestral dates on bacterial phylogenetic trees. Performs Bayesian dating of nodes of bacterial phylogenetic tree. This typically involves simultaneous Bayesian estimation of molecular clock rate and coalescent rate. Additional features include inference of root location, lost sampling dates and different evolutionary models.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software tool for fast alignment free computation of whole genome Average Nucleotide Identity . Supports pairwise comparison of both complete and draft genome assemblies. to calcualte the average nucleotide identity (ANI) between your samples.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software pipeline for pangenome investigation. Shares information between genomes to correct errors. Can call large structural variants.Fast and scalable to over 10k bacterial genomes.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software tool for analyzing bacterial pan genome profile.Used to calculate pan genome profile of population with dozens of or hundreds of strains at extremely low time cost.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software package and script for calculation of genome scale average nucleotide identity. Python3 module that provides support for calculating average nucleotide identity and related measures for whole genome comparisons, and rendering relevant graphical summary output. Where available, it takes advantage of multicore systems, and can integrate with SGE/OGE-type job schedulers for the sequence comparisons.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software tool that scores components of pan genome for associations to observed phenotypic traits while accounting for population stratification, with minimal assumptions about evolutionary processes.Designed to take gene presence absence.csv file from Roary as well as traits file created by user and calculate associations between all genes in accessory genome and traits. It reports list of genes sorted by strength of association per trait.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software R package to find and filter artificial chimeric reads specifically generated in next generation sequencing process of formalin fixed paraffin embedded tissues. These artificial chimeric reads can lead to large number of false positive structural variant calls. Artifact chimeric read filter to improve SV detection in FFPE samples.

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• SciCrunch
• 5 years ago - submitted by Lanying Wei

Software R package to simulate artifact chimeric reads specifically generated in next generation sequencing process of formalin fixed paraffin embedded tissue. Simulates normal reads as well as artifact chimeric reads that are enriched in FFPE samples. These artifact chimeric reads can lead to large amounts of false positive structural variant calls.

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• RRID-Legacy
• 5 years ago - submitted by Lanying Wei

Web application that uses annotated reference dataset to automate processing, analysis, and interpretation of new single cell RNA-seq experiment. Azimuth leverages reference based mapping, pipeline that inputs counts matrix of gene expression in single cells, and performs normalization, visualization, cell annotation, and differential expression. All results can be explored within the app, and easily downloaded for additional downstream analysis.

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• RRID-Legacy
• 5 years ago - submitted by Anita Bandrowski

Oxygen controlled Glovebox for both incubation and handling of cells in controlled physiologic or pathophysiologic conditions when used together with third party incubator. Carbon dioxide control is optional. Hosts C-Chamber Incubator Subchamber for transport of cells without exposure to room air.

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• SciCrunch
• 5 years ago - submitted by Ray Gould

Oxygen controlled hood for handling cells under physiologic or pathophysiologic conditions. Double door entry allows import/export of materials without perturbation of experimental conditions. Optional control of carbon dioxide as well. Receives C-Chamber Incubator Subchamber to transfer cells without exposure to room air.

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• SciCrunch
• 5 years ago - submitted by Ray Gould

Small, sturdy camera with all standard Phantom features and image quality. Memory can be partitioned up to 63 times to deliver images from 1.3 Mpx sensor with 12-bit depth and tightly packed 5.6 micron pixel size. Miro C110 is capable of 1295 fps at 720p HD and up to 52445 fps at reduced resolutions.

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• RRID-Legacy
• 5 years ago - by Anonymous