Curator Dashboard

Software tool for computing scaffold ordering that maximizes colinearity across collection of maps including genetic, physical or comparative maps into final chromosome build. Robust scaffold ordering based on multiple maps. ALLMAPS is robust against common mapping errors, and generates sequences that are maximally concordant with input maps. Used in building high quality genome assemblies.

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• RRID-Legacy
• 5 years ago - by Anonymous

Initiative to develop community, and establish internationally sustained data and model management service to European Systems Biology community. Web accessible repository for storing and sharing data, models, protocols and publications relating to systems biology research projects.Repository for publishing FAIR (Findable, Accessible, Interoperable and Reusable) data, operating procedures and models.Contains data, SOPs models, publications and other research assets from large research programmes and independent projects, including SysMO consortium, ERASyAPP and Digital Salmon. Public service for users to upload and publish research assets.

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• NIF
• 5 years ago - submitted by Maryann Martone

Software MATLAB toolbox for mathematical modeling of time dependent dynamical systems that can be expressed as chemical reaction networks or ordinary differential equations. Allows to automatically calibrate model parameters by fitting model to experimental measurements.Fits model to several data sets at once (multi-experiment fitting). Accessible via graphical user interfaces, from command line and scripts,determines parameter identifiability and confidence intervals,imports and exports SBML models and supports biochemical network modeling.

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• NIF
• 5 years ago - submitted by Maryann Martone

Web browser based application that facilitates construction, simulation and analysis of kinetic models in systems biology. Allows database supported modelling, basic model checking and estimation of unknown kinetic parameters based on protein structures. Integrates different online applications as well as locally installed software. Provides user guidance for sequence of steps associated with model building, model checking, simulation and analysis of results.

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• NIF
• 5 years ago - submitted by Maryann Martone

test

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• ASWG
• 5 years ago - submitted by Anita Bandrowski

Phenotypic variation of transcriptomic cell types in mouse motor cortex.Repository contains analysis code and preprocessed data.Data includes exonic and intronic gene counts, extracted electrophysiological features, extracted morphological features and z-profiles. Datasets with recorded at room temperature and recorded at physiological temperature.

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• RRID-Legacy
• 5 years ago - submitted by Anita Bandrowski

Shared research facility dedicated to improving human health by finding next generation of therapeutic agents against wide variety of diseases. The CSC is driving innovation in drug discovery by bringing together experts in drug screening with cell and molecular biologists engaged in disease research. Has assembled diverse collection of compounds derived from marine organisms, setting our facility apart as a leader in the discovery of therapeutic natural products.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Carbon Monoxide, Nitric Oxide, O2, and CO2 controller with limit control of relative humidity and monitoring of temperature conditions when used in combination with C-Chamber incubator subchamber from BioSpherix. Features secondary monitors for both Carbon Monoxide and Nitric Oxide and may be used in combination with I-Hood Incubator Hood from BioSpherix to ventilate fumes.

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• SciCrunch
• 5 years ago - submitted by Ray Gould

Nitric Oxide, O2, CO2 controller with limit control of relative humidity and monitoring of temperature conditions when used in combination with C-Chamber incubator subchamber from BioSpherix. Features secondary monitor of Nitric Oxide and may be used in combination with I-Hood Incubator Hood from BioSpherix in order to ventilate fumes.

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• SciCrunch
• 5 years ago - submitted by Ray Gould

Carbon Monoxide, O2, and CO2 controller that also features limit control of relative humidity and monitoring of temperature conditions when used in combination with C-Chamber Incubator Subchamber from BioSpherix. This system also features secondary monitor for Carbon Monoxide and may be used in combination with I-Hood Incubator Hood from BioSpherix for ventilating fumes.

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• SciCrunch
• 5 years ago - submitted by Ray Gould

O2 and CO2 controller that also features relative humidity limit control and monitoring of temperature conditions when used in combination with C-Chamber Incubator subchamber from BioSpherix.

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• SciCrunch
• 5 years ago - submitted by Ray Gould

Incubator controls dynamic or static levels of O2 and CO2 and offers O2 and CO2 profiling. Dual channel and dual gas controller for incubators and C-Chambers. Oxygen and carbon dioxide control is managed via independently programmable channels for optimum control. Applications of OxyCycler C42 incubator controller include intermittent hypoxia, graded hypoxia, and timed hyperoxia.Comes with computer software for easy interface, real time trend charting, data logging, and remote operation.

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• SciCrunch
• 5 years ago - submitted by Ray Gould

Protective hood for removing fumes which may escape incubator.

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• SciCrunch
• 5 years ago - submitted by Ray Gould

Provides electronic design services and medical device development including Embedded systems (Firmware, Hardware, and Software solutions), Electronic prototype design services,PLM (Product Life-cycle Management) for electronic design. Supports Product Management from concept to final customer deployment. Expertise to make electronic device complete consumer product that can be deployed for mass production,Sustaining and maintenance engineering for electronic products,Consulting services in the areas of CE/FCC compliance, EMI, and ESD for lab products and certain consumer electronics,Troubleshooting and repair of released electronic systems.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Core provides Genomics, Transcriptomics and Proteomics Services to researchers.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Provides advanced instrumentation as well as high level technical and scientific expertise in multi dimensional Flow Cytometry and Cell Sorting, to facilitate science, improve the quality, and advance the scope of MSK research.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Core facility is designed for Imaging living cells or tissues, Fluorescence imaging, Image analysis. Provides imaging of adherent cells or tissue fragments,drug delivery using perfusion chamber, gas exchange for the growth media, Rose chambers for imaging, image processing and analysis software to assist in data analysis and interpretation.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software developed for forensic data analysis. When combined with the Applied Biosystems 3500 Data Collection Software v4.0 and Applied Biosystems STR kits, helps enhance productivity and confidence, as well as IT support and compliance, in HID laboratory data interpretation workflow.

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• SciCrunch
• 5 years ago - submitted by David Swanepoel

Software tool as cross platform package for population genetic analyses that runs within Microsoft Excel. Offers analysis of diploid codominant, haploid and binary genetic loci and DNA sequences.Originally developed as teaching tool to facilitate teaching population genetic analysis at graduate level.

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• SciCrunch
• 5 years ago - by Anonymous

University wide core facility offers NMR,SEM including FIB, EBS, EBSD, Tensile Stage,Confocal,X-Ray Photoelectron Spectroscopy,X-Ray Microscope aka Micro CT, Expert analysis of research and industrial samples,Training in scientific instrument operation and data analysis, Maintenance, repair, and calibration of instruments,Specialty instrument engineering design and application services,Facilitation of access to scientific instruments throughout the university.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth