Curator Dashboard

Software pipeline to measure strand specific centromeric RNA normalized with DCS control of nanopore sequencing. Analysis pipeline for transcript capturing and analysis through nanopore sequencing.

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• 5 months ago - submitted by Santosh Kumar

Program uses cancer surveillance infrastructure to provide researchers with access to tissue and data. SEER Program cancer registry provides researchers with de-identified, but linked, archival, formalin-fixed, paraffin-embedded (FFPE) tissue from clinical care and/or clinical data obtained from medical record abstraction for secondary use in cancer research. Researchers may also request de-identified demographic information, outcomes, pathology reports, custom clinical data collection, and/or digital whole slide images. Used for studying rare cancers, early onset cancers, multiple primary cancers, unusual cancer outcomes, and cancers in small populations.

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• 5 months ago - submitted by Alison Van Dyke

Software automated pipeline for population genomic analyses, pathogen identification, variant detection, and biosurveillance. The pipeline accepts paths to raw reads for one or more organisms and creates reports in the form of an interactive HTML document. Significant features include the ability to analyze unidentified eukaryotic and prokaryotic samples, creation of reports for multiple user-defined groupings of samples, automated discovery and downloading of reference assemblies from NCBI RefSeq, and initial identification based on k-mer sketches followed by multi gene phylogeny and SNP-based phylogeny.

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• 5 months ago - by Anonymous

Core to improve access, efficiency, and support for research teams working with a wide range of data sources to study and address population health issues. Part of data ecosystem of research data hubs and related services at NYULH. Our goal is to help Population Health PIs and Analysts solve their administrative and analysis issues. This includes data acquisition, storage, cleaning, analysis, and dissemination.

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• 5 months ago - submitted by Edyta Vieth

Core provides advanced mass spectrometry-based proteomics to support basic, translational, and clinical cancer research. Delivers high quality, quantitative proteomic data using instrumentation, including Thermo Scientific Astral Zoom and Ascend Tribrid orbitrap mass spectrometers. Services include gel band protein identification, immunoprecipitation and pulldown proteomics, cleavable cross-linking mass spectrometry, and global quantitative proteomics and post‑translational modification analysis using tandem mass tag‑based multiplexing or label‑free data-independent acquisition and data-dependent acquisition approaches. The CPSR supports end-to-end proteomics pipelines—from whole cells and primary tumor organoids through quantitative analysis and data visualization—providing comprehensive “soup to nuts” analytical capability.

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• 5 months ago - by Anonymous

JEOL JEM-2100 is a versatile, 200 kV transmission electron microscope (TEM) designed for high-resolution imaging and structural analysis across materials, nanotechnology, and biological sciences. It allows researchers to visualize nanoscale structures, perform chemical composition mapping, and analyze atomic crystal lattices.

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• 5 months ago - submitted by Edyta Vieth

Core for high resolution imaging and structural analysis of biological specimens, soft matter, and nanomaterials. Used to process samples from solution or powder, allowing researchers to visualize internal structures down to the subnanometer scale. It is critically important that the samples are non-magnetic.

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• 5 months ago - submitted by Edyta Vieth

Software statistical framework for comprehensive integration of multi-modal single-cell data. Used for integration of multi-omic data sets in unsupervised fashion.

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• 5 months ago - submitted by Massimiliano Romano

Software framework for the alignment of cancer cell lines and tumors across multiple molecular layers. Used for matching in vitro cancer models to patient tumors.

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• 5 months ago - submitted by Massimiliano Romano

Software automated and comprehensive pipeline for cancer genome mutational signature analysis. Provides one-stop solution for de novo signature extraction, reference signature fitting, signature stability analysis, sample clustering based on signature exposure in different types of genome DNA alterations including single base substitution, doublet base substitution, small insertion and deletion and copy number alteration. It can auto-extract mutational signatures, fit mutation data to all/specified COSMIC reference signatures (SBS/DBS/INDEL) and run bootstrapping analysis for studying signature stability.

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• 5 months ago - submitted by Massimiliano Romano

Software R package to compress multi-omic data into a single matrix of reduced size. Used for fast and scalable identification of relevant multi-omics relationships between biological entities at the bulk and single-cells level.

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• 5 months ago - submitted by Massimiliano Romano

High-field nuclear magnetic resonance (NMR) spectrometer manufactured by Bruker Corporation with Console Brand: Avance III HD, Magnet Brand: Ascend and Field Strength: 850 MHz. Equipped with a cryo-cooled probe that cools the electronics with liquid helium or nitrogen to reduce thermal noise and boost signal sensitivity. Software: TopSpin 3.7 running on CentOS 7; Probe: 5mm Triple-resonance Inverse (TCI) cryoprobe with Z-Gradients; Features: Temperature controlled SampleCase (up to 24 samples), Nitrogen Liquefier, Dual-Receiver, High-sensitivity 1H & 13C. Used in structural biology, chemistry, and materials science to determine the molecular structure, dynamics, and interactions of complex molecules.

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• 5 months ago - submitted by Alexandar Hansen

Software C library that provides a simple interface to read whole-slide images (also known as virtual slides).

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• 6 months ago - by Anonymous

Public research university in Huntsville, Texas. Founded in 1879, it is the third-oldest public college or university in Texas. It is one of the first normal schools west of the Mississippi River and the first in Texas.

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• 6 months ago - submitted by Edyta Vieth

Core provides advanced imaging and characterization capabilities including SEM, AFM, and infrared thermal microscopy supporting research in engineering, materials science, biology, and more. Offers imaging and characterization for semiconductors and/or other Micro/Nano scale devices.

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• SciCrunch
• 6 months ago - submitted by Edyta Vieth

Core provides access to analytical cytometers and cell sorters for trained users and operator-assisted cell sorting by appointment during business hours. Assists with protocol and assay development, including sample preparation, selection of antibodies and fluorochromes, proper staining and compensation controls, and selection of appropriate buffers. Offers assistance with data analysis using FlowJo, FCS Express, DIVA and SpectroFlo software is also available by appointment.

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• SciCrunch
• 6 months ago - submitted by Edyta Vieth

Core provides biological electron microscopy services including sample preparation, SEM and TEM imaging, array tomography, and cryo-EM plunge freezing.

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• SciCrunch
• 6 months ago - submitted by Edyta Vieth

Facility offers services from bench to publication to all consortium members. Provides access to the facilities's microscopes and analysis workstations. Provides training, education, support, and mentorship in all aspects of preparing, acquiring, processing, analyzing, and publishing microscopy data.

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• SciCrunch
• 6 months ago - submitted by Edyta Vieth

Core provides specialized imaging services for primarily biological research, with additional applications for materials chemistry, forensic science, and engineering technology. Available instrumentation includes various light microscopes, a laser-scanning confocal, scanning and transmission electron microscopes, and X-ray imaging.

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• SciCrunch
• 6 months ago - submitted by Edyta Vieth

Core provides equipment, expertise, service and training for testing a range of common mouse behaviors to study neurological disorders, such as Autism Spectrum Disorder, intellectual disability, anxiety/depression, and Alzheimer Disease. Performs behavioral testing, data analysis, and data interpretation.Offers personnel training for investigator to have access to the behavior equipment if they prefer to test the mice themselves

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• SciCrunch
• 6 months ago - submitted by Edyta Vieth