Curator Dashboard

Software R package for basic statistical tests including t-test, Wilcoxon test, ANOVA, Kruskal-Wallis and correlation analyses. Output of each test is automatically transformed into data frame to facilitate visualization. Additional functions are available for reshaping, reordering, manipulating and visualizing correlation matrix. Functions are also included to facilitate analysis of factorial experiments. Can compute several effect size metrics.Package contains helper functions for identifying univariate and multivariate outliers, assessing normality and homogeneity of variances.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software tool as extension of ggplot2 aimed at supporting relational data structures such as networks, graphs, and trees. While it builds upon foundation of ggplot2 and its API it comes with its own self-contained set of geoms, facets, etc., as well as adding concept of layouts to grammar.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software R package of igraph network analysis library.

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• RRID-Legacy
• 5 years ago - by Anonymous

System for long term volumetric imaging of living cells. Makes light sheet fluorescence microscopy available for live cell imaging at subcellular resolution. Automated system for volumetric imaging of subcellular structures and dynamics over hours and days with protection from photo damage.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software tool as set of scripts for 3' RNA-seq quantification.

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• RRID-Legacy
• 5 years ago - by Anonymous

Web tool as cluster-level knowledge base that allows different ENVironmental Research Infrastructures (ENVRI) users, such as Research Infrastructures (RI) developers and data managers, to effectively share their technical practices, identify common data and service requirements and design patterns, and facilitate search and analysis of existing RI solutions for environmental RI interoperability challenges.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software tool to evaluate bone strength by considering entire bone as three dimensional structure and applying finite element analysis.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software tool for BUSCO compilation and comparison. Used for assessing completeness in multiple genome assemblies.Used for assembly comparison designed to be robust to differences in assembly size and base calling quality.

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• SciCrunch
• 5 years ago - submitted by Richard Edwards

Software tool for read-depth based genome size prediction. Wrapper for genome size estimate methods of Diploidocus.Uses long read depth of coverage and BUSCO single copy orthologue prediction to estimate genome size.

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• SciCrunch
• 5 years ago - submitted by Richard Edwards

Software package for diploid genome assembly analysis. Sequence analysis toolkit for number of different analyses related to diploid genome assembly.

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• SciCrunch
• 5 years ago - submitted by Richard Edwards

Publicly available, searchable, data resource that aims to increase transparency, reproducibility and translatability of preclinical efficacy studies of candidate therapeutics for Alzheimer’s disease. Knowledge platform for dissemination of data and analysis to scientists, from academic centers, industry, disease focused foundations. Provides quick access and visibility to integrated preclinical efficacy data from published and unpublished studies.

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• dkNET
• 5 years ago - submitted by Maryann Martone

PE-conjugate NP antigen

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• RRID-Legacy
• 5 years ago - submitted by Kristoffer Johansen

Software tool designed by Data Coordination Platform of Human Cell Atlas to process single-cell RNAseq data generated by Smart-seq2 assays.Processes stranded or unstranded, paired- or single-end, scRNA-seq data from an individual cell.

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• SciCrunch
• 5 years ago - submitted by Elizabeth Kiernan

Software tool as spatial analysis software for whole tissue sections.Utilizes information on cell type and position to phenotype local neighborhoods and reveal how their spatial distribution leads to generation of global tissue architecture.Used to make advanced data analytic techniques accessible for single cell data with position information.

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• RRID-Legacy
• 5 years ago - by Anonymous

Open source software tool as 3D finite element grid generator with build in CAD engine and post processor. Provides meshing tool with parametric input and advanced visualization capabilities. Built around geometry, mesh, solver and post processing modules.Specification of any input to these modules is done either interactively using graphical user interface, in ASCII text files using Gmsh own scripting language (.geo files), or using C plus plus, C, Python or Julia Application Programming Interface.

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• RRID-Legacy
• 5 years ago - by Anonymous

Evidence Graph Ontology extends core concepts from W3C Provenance Ontology PROV-O to describe evidence for correctness of findings in biomedical publications. Semantic data model in EVI is expressed using OWL2 Web Ontology Language.

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• dkNET
• 5 years ago - submitted by Maryann Martone

General purpose, document based, distributed database built for modern application developers and for the cloud. Offers Community and Enterprise version of database.MongoDB Community is source available and free to use edition of MongoDB. MongoDB Enterprise is available as part of MongoDB Enterprise Advanced subscription and includes comprehensive support for your MongoDB deployment. MongoDB Enterprise also adds enterprise-focused features such as LDAP and Kerberos support, on-disk encryption, and auditing.MongoDB also offers Atlas,hosted MongoDB Enterprise service option in cloud which requires no installation overhead and offers free tier to get started.

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• dkNET
• 5 years ago - submitted by Maryann Martone

Software tool as knowledge graph platform to create flexible, reusable data layer for answering complex queries across data silos. Used for organizing data to highlight relationships between data points. Unifies data based on its meaning, creating connected network of knowledge.

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• dkNET
• 5 years ago - submitted by Maryann Martone

Open source identity and access management solution written in Java. Offers features such as Single-Sign-On, Identity Brokering and Social Login, User Federation, Client Adapters, Admin Console, and Account Management Console by WildFly, a division of Red Hat.

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• dkNET
• 5 years ago - submitted by Maryann Martone

Software tool based on open source solutions to make deploying microservices easy. Used for deployment of modern IT environments. Allows to expose applications to network in dynamic environment.Traefik Stack by Traefik Labs Inc. as cloud native stack to help enterprises manage their entire network across data centers, on-premises servers and public clouds.Tools options include Traefik Proxy,Traefik Enterprise,Traefik Mesh,Traefik Pilot.

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• dkNET
• 5 years ago - submitted by Maryann Martone