Curator Dashboard

Open source software tool for visually exploring ploidy with Next Generation Sequencing data.Used to visualize and explore ploidy levels in newly sequenced genome, exploiting short read data. Allows identification of ploidy level of newly sequenced genome in visual way. Implemented in Python and R.

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• RRID-Legacy
• 5 years ago - submitted by Renato Augusto Corrêa dos Santos

Software R package creating customizable presentation ready tables, summarizing data sets, regression models, and more. Used for publication ready data summary and analytic result tables.

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• RRID-Legacy
• 5 years ago - submitted by Ron Gadot

Supercomputer user facility operated by Lawrence Berkeley National Laboratory for the United States Department of Energy Office of Science.Houses high performance computing and data systems used by scientists at national laboratories and universities around the country.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software R package for statistical analysis of phenotypic data.Tool kit for standardized analysis of high throughput phenotypic data.

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• RRID-Legacy
• 5 years ago - by Anonymous

LED illumination system for transmitted light applications, including brightfield, darkfield, DIC, Dodt gradient contrast and phase contrast. Includes LED illuminator and controller.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software tool for video editing. Used for social sharing, TV, and film.

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• RRID-Legacy
• 5 years ago - by Anonymous

Provides services using mass spectrometry, including identification and relative quantification of proteins and several advanced methods for profiling and quantitation of small molecules.Provides outreach and education program including workshops,seminars and courses.Proteomics services include Bottom-up Proteomics of whole organisms, organs, organelles, tissues, cell pellets, pulldowns, complex or single protein mixes from solutions or gels;Quantification by label-free or multiplexed labeling techniques with microscale subfractionation to increase coverage;Post Translational Modification Characterization especially phosphopeptide enrichment from whole organism digests, but also ubiquitylation, acetylation, etc.Metabolomics services include Untargeted Quantification of small molecules;Primary metabolism using GC-MS and NIST/Fiehn Libraries;Secondary metabolism using LC-MS and Progenesis QI, NIST Library, mzCloud;Targeted Quantification using HPLC or LCMS.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Open source software tool as adapter and quality trimmer for Next-Generation Sequence data.

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• SciCrunch
• 5 years ago - submitted by Jiacheng Chuan

Software pipeline for single-nucleus RNAseq data generated by Smart-seq2 assays.Used to simultaneously process multiple libraries of single nuclei Smart-seq2 and Smart-seq4 data. For each library (nucleus), the pipeline trims paired FASTQ files, aligns trimmed reads to the genome, counts intronic and exonic reads, and calculates quality control metrics. Counts and metrics for all libraries are combined into merged Loom formatted count matrix.

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• RRID-Legacy
• 5 years ago - submitted by Elizabeth Kiernan

Portal within Wikipedia platform for presenting content, tools, and discussion related to clinical trials.Anyone can join to express their interest in developing content in Wikidata related to clinical trials.

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• RRID-Legacy
• 5 years ago - submitted by Lane Rasberry

Web app based tool as one of GLOBE Observer tools. Used to document what is on land. Once you have downloaded the app and created account, Land Cover tool will guide you through observation process. You will report on current surface conditions, then take photographs in all four cardinal directions, up and down. Optionally, you can classify land cover in your photographs, telling if it is grassland,forest or urban area, as well as compare your classification to satellite land cover observation and note any differences.

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• RRID-Legacy
• 5 years ago - by Anonymous

Open Source software library for molecular simulation applications. Provides ready-to-use implementations of standard algorithms.Serves as code basis that can be easily extended and modified to deal with standard and non standard problems in molecular simulations.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software tool used to create summary of findings tables for cochrane systematic reviews. Web application to create, manage and share summaries of research evidence called Evidence Profiles and Summary of Findings Tables.

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• RRID-Legacy
• 5 years ago - by Anonymous

Web server providing online analysis of coevolving amino acid pairs in overlapping genes, where residues might be located inside or outside overlapping region.

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• RRID-Legacy
• 5 years ago - submitted by Francesco OTERI

Software Python tool as Vanderbilt University curation tool.Used for exporting public profiles of university faculty from Vanderbilt University database into Wikidata.Used to create or update items in Wikidata using data from CSV spreadsheet data.

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• RRID-Legacy
• 5 years ago - submitted by Lane Rasberry

Open source software Java tool for working with data. Used for loading data, cleaning up data, transforming data from one format into another and extending it with web services and external data.

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• RRID-Legacy
• 5 years ago - submitted by Lane Rasberry

Provides optical and electron microscope infrastructure for live cell imaging, multi photon imaging, advanced sample preparation including cryo-preparation for electron microscopy, routine SEM and TEM, Cryo-TEM, TEM tomography, and Correlative Light and Electron Microscopy (CLEM). Equipped with 4 electron microscopes (1 SEM and 3 TEMs), 2 advanced fluorescence microscopes (confocal/multi-photon and spinning disk), cryo-fixation (High pressure freezer, Vitrobot) and EM processing equipment (Microwave, critical point dryer, coaters).Provides microscopy access, training and service.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Open source software Python package for working with hierarchical data. Provides APIs for specifying data models, reading and writing data to different storage backends, and representing data with Python object.Used for working with standardizing, reading, and writing hierarchical object data.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software tool for importing data sets into Wikidata. Can list entries of some external databases, and allows users to match them against Wikidata items.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Web tool as official query tool for Wikidata.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth