Curator Dashboard

Project related to deep learning based pose estimator for studying how neural circuits control limbed behaviors in tethered Drosophila. Includes Deep Fly image annotation tool for pose estimation and to permit further correction of 2D pose estimates, which are automatically converted to 3D pose.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Project related to measurement of fast eye movement dynamics.Tracking eye position in head fixed applications system created by scientists from Boston University. Includes software tool as part of multithreaded eye tracker and Teledyne DALSA Camera with GigE-V framework APIs for Linux.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Project for markerless pose estimation of user defined body parts with deep learning.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software kinematics analysis tool used to study movement coordination and analyzing limb, head, and tail kinematics of freely walking mice.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Open source software Python toolbox which automatically synchronizes recorded facial expressions to videos and events such as social interactions.Framework for recording facial expressions with head mounted cameras.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Project related to pose estimation and tracking.Includes software toolkit for 2D pose estimation of user defined keypoints using deep learning.Method for pose estimation developed by behavioral scientists at the Max Planck Institute of Animal Behavior.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software package to track object in 3D based on 3D schematics of scene.Semi automatic 3D video tracking technique to analyse movements and routines of aquatic animals with application to captive dolphins.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Project related to emotions and facial expressions. Includes open source guide to building affordable head mount for camera to maintain high temporal and spatial resolution of face throughout duration of experiment. Device is paired with FaceSync, Python toolbox which automatically synchronizes recorded facial expressions to videos and events such as social interactions.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Open source, modular software tools for high resolution zebrafish tracking and analysis.Software suite of Bonsai modules for specifically tracking and analyzing zebrafish movements and integrating these data with closed loop experiments.Can be used in open loop fashion for collecting, analyzing, and integrating data from multiple sources in real time, or from offline sources for batch processing of pre-recorded data.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Open source software package for markerless pose estimation. 2D keypoint detection in animals.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Project related to study movement coordination in free walking mice. Provides noninvasive system consisting of cameras and machine learning algorithms that allow for three dimensional detection and tracking of mouse paws, tail, and nose.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Project related to tracking animal behavior. Provided system includes two cameras and software package to track aquatic animals within captivity.Semi automatic 3D video tracking technique to analyse movements and routines of aquatic animals with application to captive dolphins.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Portal provides tools for investigating visuomotor integration specific to high speed kinematic tracking in small model organisms in closed loop experiments. University of Toronto scientists developed suite of Bonsai modules for specifically tracking and analyzing zebrafish movements and integrating these data with closed-loop experiments. BonZeb modules can also be used in an open-loop fashion for collecting, analyzing, and integrating data from multiple sources in real time, or from offline sources for batch processing of pre-recorded data.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Project related to behavior tracking and analysis. Provides deep learning toolbox that automates taking high speed quality video to track behavior in rodents and humans.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Project related to processing video, extracting object position information, and streaming data.Provides set of programs for processing video for behavioral research. Includes OAT software tool as real time position tracker which was developed by Massachusetts Institute of Technology scientists.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software pipeline that pairs unsupervised pattern recognition with supervised classification to achieve fast predictions of behaviors that are not predefined by users.Unsupervised learning algorithm that discovers and classifies actions based on inherent statistics of data points provided.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software tool to work on videos (not poses).Uses image analysis and multivariate statistical methods to find stereotyped behaviors in flies, mice, and other species.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Collection of tools to do video analysis in behavioral neuroscience applications.Offers open source software tools including SLEAP, LEAP and MotionMapper.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Method for pose estimation that uses deep neural networks.Open source software tool as deep learning based framework for estimating positions of animal body parts.Supports multi animal pose estimation and tracking, and includes advanced labeling or training.SLEAP is next generation of LEAP and allows for tracking multiple animals.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software R package for Nuclear Mitochondrial integration events NUMT detection using structural variant calls.

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• RRID-Legacy
• 5 years ago - by Anonymous