Curator Dashboard

Project related to sharing worm tracking data and analysis routines.Open access repository for storing, accessing, filtering data and analysis.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Project related to calcium imaging.Provide open source tool for combined analysis of head mounted calcium imaging and behavior. Used to analyze imaging data from head mounted microscopes simultaneously with behavioral data.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Project related to behavior analysis.Mt.Sinai scientist developed open source video analysis pipeline for investigation of animal behavior.Used to track location, motion, and freezing of animal.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Project related to tracking individual animals in large collective groups.Provides algorithm and software for tracking individuals in large collectives of unmarked animals.Tracks animal identification and tracks when animals touch or cross paths in front of one another.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Project related to involvement in larval zebrafish behavioral experiments.Provides integrated system for stimulation, tracking and closed loop behavioral experiments. Provides timed stimulus presentation, interfacing with external devices and simultaneous real time tracking of behavioral parameters such as position, orientation, tail and eye motion in both freely swimming and head restrained preparations.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Project related to eye tracking system for human research.System includes open source software for accurate eye tracking. Can identify shapes such as circles, lines, and triangles.You can rotate and mirror images and also use variety of filters.Capable of processing video in real-time for optical flow. App for viewing multiple video streams from USB cameras.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software toolbox that automates taking high speed quality video to track behavior to analyze and track behavior in rodents and humans.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Open source software toolkit for computer classification of complex social behaviors in experimental animals.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software tool as real time position tracker for behavioral research. Used for processing images, extracting object position information, and streaming data to disk and/or the network in real time.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

University of Washington project SimBA for analysis of complex social behaviors.Used for automated behavioral scoring. Includes open source software toolkit for computer classification of complex social behaviors in experimental animals. Uses data from popular open source tracking tools in combination with small amount of behavioral annotations to create supervised machine learning classifiers that can then rapidly and accurately score behaviors across different background settings and lighting conditions.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Project related to unsupervised behavior analysis.Carnegie Mellon University has shared B-SOiD, open source unsupervised algorithm for discovery of spontaneous behaviors. Includes software pipeline that pairs unsupervised pattern recognition with supervised classification to achieve fast predictions of behaviors that are not predefined by users.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Project for tracking interactions among freely moving monkeys.System includes integrated hardware and software for pose tracking in freely moving rhesus macaques.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Project related to rodent tracking and task control.Provides closed loop system for machine vision rodent tracking and task control created by scientist from Washington University. System to track and report mouse activity while they are contained in simple arena. System uses OpenMV M7 microcontroller to acquire images of arena and process them in real-time to report mouse centroid data to text file. Wireless position tracker for automatically tracking mice in high contrast arenas.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Shared database of videos featuring juvenile and adult male rats and adult male mice exploring stationary objects.This dataset includes wide variety of experimental conditions including genetic, pharmacological, and sensory deprivation interventions to explore how active sensing behavior is modulated by different factors. Database of high speed videos of whisking behavior in freely moving rodents.Open source high speed infrared videography database to study principles of active sensing in freely navigating rodents.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software Python toolbox for interactive characterization in neuroscience.Users can read in variety of file formats for neural data and video, which they can then process, filter, analyze, annotate and plot.Used to review and annotate signal data synchronized with video, performs simple initial analyses including signal filtering and spike detection, supports variety of file formats.Facilitates collaborations by using portable specification for loading and processing data and retrieving data files from online sources.App for Windows, macOS, and Linux to review and annotate electrophysiology data and simultaneously captured video.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software toolkit with high level API for 2D pose estimation of user defined keypoints using deep learning.Written in Python and built using Tensorflow and Keras.Method for pose estimation developed by behavioral scientists at the Max Planck Institute of Animal Behavior.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Portal provides shared database of videos featuring juvenile and adult male rats and adult male mice exploring stationary objects.This dataset includes wide variety of experimental conditions including genetic, pharmacological, and sensory deprivation interventions to explore how active sensing behavior is modulated by different factors. Database of high speed videos of whisking behavior in freely moving rodents.Open source high speed infrared videography database to study principles of active sensing in freely navigating rodents.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Project about synchronizing video and neural signals. Provides software Python toolbox for interactive characterization in neuroscience.Software tool used to review and annotate signal data synchronized with video, performs simple initial analyses including signal filtering and spike detection, supports variety of file formats.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software tool as PyTorch and PyQT5 implementation of 2D-3D tethered Drosophila pose estimation. Image annotation tool used for pose estimation and appendage tracking. Provides interface for pose estimation and to permit further correction of 2D pose estimates, which are automatically converted to 3D pose.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Open source software tool used as part of multithreaded eye tracker.Video based eye tracker.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth