Curator Dashboard

Project related to fluorescence imaging to record neural activity in awake, freely behaving mice.Provided system is developed by UCLA scientists. Miniscope system includes Miniscope with single, flexible coaxial cable to carry power, control signals, and imaging data to open source Data Acquisition hardware and software. Open source miniature fluorescence microscope uses wide-field fluorescence imaging to record neural activity in awake, freely behaving mice.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Project related to time series calcium imaging evaluation and pre-processing. Included open source graphical viewer for time series calcium imaging evaluation and pre-processing is provided by Swedish University scientists .

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Portal includes compared several toolboxes for spike and LFP analysis, connectivity analysis, dimensionality reduction, and generalized linear modeling. Discussion about major features of software available for Python and MATLAB including Brainstorm, Chronux, Elephant, FieldTrip, gramm, Spike Viewer, and SPIKY. They include succinct tables for assessing system and program requirements, quality of documentation and support, and data types accepted by each toolbox.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Project related to calcium imaging.Provides software library, CaImAn, for one and two-photon Calcium Imaging data Analysis.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Project related to neurophysiology data acquisition and analysis.Included open source software application for neurophysiology data acquisition and analysis is provided by Howard Hughes Medical Institute Janelia Research Campus scientists. Program is based in MatLab, and evolved from earlier open source software package called Ephus.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Portal includes system for combined behavioral tracking, electrophysiology, and closed loop stimulation provided by University of Oslo scientists.Integrates Bonsai and Open Ephys with multiple modules.Provides guide for setting up this system.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Project related to wireless controlled optogenetic stimulation. Provides system for wireless optogenetic stimulation developed in Karpova Lab with ability to be customized.Features Cerebro,rechargeable, battery powered wireless receiver;head implant containing optical fibers and two independent laser diodes; base station for transmitting radio signals to Cerebro, controlled by Windows computer via USB or by TTL; charging dock; and Xavier, user friendly GUI for sending and logging base station commands.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Project related to preprocessing of images. Provieds software Python tool to processes raw macaque fMRI images using algorithms embedded in automatic pipeline.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Project related to neural data analysis. Provides open-source and reproducible software suite that benchmarks performance of automated spike sorting algorithms across extensive, curated database of ground truth electrophysiological recordings, displaying results interactively on continuously updating website.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Project related to ultrasonic vocalizations detection. Provides device designed for automatic detection of 50kHz ultrasonic vocalizations.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Project related to real time acquisition and processing of electrophysiological data.Provides software tool for acquisition and processing of electrophysiological data.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Project related to function of cerebral cortex. Included model system for studying cortical function is provided by UC Berkeley scientists. System includes lickometer which employs infrared beam and sensor to minimize electrical noise artifacts during neurophysiology experiments and can be easily mounted in micromanipulator for precise and repeatable positioning.Open source lickometer was designed in conjunction with open source water delivery system.Together, these provide basic hardware for DIY behavioral assay and reward system for mice.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Project related to report animal decision in response to stimulus.Includes software tool as Arduino and Python based platform for Go or No Go sensory task to report animal decision in response to stimulus provided by University of Melbourne, Melbourne, VIC, Australia scientists.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Project aims to establish computing platform for rodent behavior research using Raspberry Pi computer. They have built several devices for conducting operant conditioning and monitoring environmental data.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Project related to presenting visual and auditory stimuli, recording behavior in form of nose pokes or screen touches, and delivering liquid rewards. ProvidesOperant chamber built with iPod Touch and Arduino microcontroller as main components.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Project related to investigate mechanisms of oculomotor behavior.Included system is provided by New York University scientists to track eye movement.System includes camera module, lens, IR-Light source, mounting solution, data acquisition device, and general purpose PC. System consists of open source software and modular hardware solution to eye tracking for use in humans and non-human primates.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Portal related to control and decision making, focusing on role of prefrontal cortex. American University scientists through their GitHub repository provide 3D print files for many of behavioral devices used in their lab, including Nosepoke and Lickometer designed from rats.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Project related to individual mice positions analysis, specifically their nose positions. Includes software tool for analysis of mouse position data designed by Hebrew University scientists. Provides open source software to analyze positions of individual mice, specifically their nose positions, in behavioral arena with the goal of minimizing error.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Project related to self initiated conditioning and behavior tracking in mice. Provides automated system that can track large numbers (over 25) of socially housed mice through implanted RFID chips on mice. With RFID trackers and other analyses, behavior of mice can be tracked as they train and are subsequently tested on (or self-initiate testing in) odor discrimination task over months with thousands of trials performed every day.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Portal related to biomedical signals.Provides wearable data acquisition device with special focus on biomedical signals such as heart activity (ECG), muscle activity (EMG) and brain activity (EEG).Open source high precision bluetooth data acquisition device.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth