Curator Dashboard

Open source software for analyzing spatial navigation search strategies.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software MATLAB package for linearization of place fields in complex mazes.Graph theoretic approach for production of linear place fields in complex mazes. Used for producing linear place fields for hippocampal cells during behavior in complex mazes.Specifically designed to deal with mazes with one or more decision points (e.g., T-maze, W-maze, double T-maze, radial maze, plus maze, etc).

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software tool as open source Python framework for behavioral neuroscience that distributes experiments over networked swarms of Raspberry Pis. Toolkit of flexible modules to design experiments without rigid programming and API limitations.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Open source software MATLAB toolbox for running behavioral neuroscience experiments and managing data.Used for probing neurons and behavior. Used for managing behavioral neuroscience experiments and acquiring experiment related data.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software package for processing and visualising data from startle experiments in rodents or experiments measuring grip strength in rodents.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software toolbox for visualizing and quantifying movement from pre-recorded videos.Used for summarizing animal movement data as single image ( spectral time lapse algorithm) as well as automate analysis of animal movement data.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software tool for data logging and analysis.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software toolbox for unsupervised video analysis of rodent behavior.Used for videographic processing of head fixed rodent behavior.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software tool as event based framework for processing and controlling data streams. Open source software tool as visual language for reactive programming.Used for composing reactive and asynchronous data streams coming from video cameras, microphones, electrophysiology systems or data acquisition boards.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software tool for motion tracking.Provides real time or pre recorded motion tracking of specimen in open field. Used to track path of object of interest in live feed from camera or recorded video. Used to track rodents in open field maze as well as retina of mice.New version v2 of Pyper allows to customise image processing to track different kind of objects.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software tool to automatically track rodent position and movement.Used to track head movements, body movements and also aspects of body size. It is able to identify certain behaviours from video footage too, such as rotations, moving forwards, interacting with objects and staying still.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Open source event logging software for video/audio coding and live observations.Multiplatform standalone program that allows user specific coding environment for computer based review of previously recorded videos or live observations.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software toolbox for automated detection of forepaw trajectories in mice.Open source code to simultaneously track movement of individual paws during spontaneous grooming episodes and walking in multiple freely behaving mice/rats.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software R package for data analysis.Enables high throughput analysis of behavior in Drosophila and other animals.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Open source software tool for 3D-video based markerless computerized behavioral analysis for laboratory animals.Used to reconstruct full 3D images of animals and fit skeletal models to 3D image to estimate 3D pose of animals.Open-source 3D video based behavioral analysis system for neuroscience.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software package for Live Mouse Tracker analysis. lmt-analysis provides all analysis tools needed to extract information from tracking performed by live mouse tracker.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software tool for behavioral and video tracking analysis in laboratory animals. Used to support detailed ethography, video tracking, and extraction of kinematic variables from digital video files of laboratory animals.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software Python package with functions for extracting and analyzing data recorded using camera system.Used to monitor behaviors including eye position, whisking, and ear movements in unrestrained animals.Can be mounted in combination with neural implants for recording brain activity.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software tool for tracking organisms.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software tool as repository of documentation, software, and discussions to share worm tracking data and analysis routines.Open access repository for storing, accessing, and filtering data; interchange format for notating single or multi worm behavior; and file formats written in Python for feature extraction, review, and analysis.

• Resource
• SciCrunch
• 5 years ago - submitted by Edyta Vieth