Curator Dashboard

Software tool for genotype imputation for scRNA-seq based on low rank approximation. Used for imputation of missing values in single cell RNA-sequencing data.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software tool for panoramic stitching of single cell data. Algorithm identifies and merges shared cell types among all pairs of datasets and accurately integrates heterogeneous collections of scRNA-seq data.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software suite of tools to qualitatively and quantitatively evaluate outcomes of genome editing experiments in which target loci are subject to deep sequencing and provides integrated, user friendly interface. Used for analysis of CRISPR-Cas9 genome editing outcomes from sequencing data. CRISPResso2 provides accurate and rapid genome editing sequence analysis.Used for analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments.

• Resource
• RRID-Legacy
• 5 years ago - by Anonymous

Software package for generating structure based models.

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• RRID-Legacy
• 5 years ago - submitted by Edyta Vieth

Software package for generating structure based models. SMOG 2 is complete rewrite of original SMOG software. SMOG 2 is standalone software package for generating SMOG models. Useful if you want to modify force field (e.g. include new residues, design new variant, etc).

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• RRID-Legacy
• 5 years ago - by Anonymous

Public university in Florianópolis, the capital city of Santa Catarina in southern Brazil.

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• RRID-Legacy
• 5 years ago - submitted by Edyta Vieth

Open source software package for creating and controlling visual environments.Software package for Bonsai which allows for control of 2D and 3D environments.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Open source software tool for scalable calcium imaging data analysis. Used for large scale calcium imaging analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Open source and reproducible software suite that benchmarks performance of automated spike sorting algorithms across extensive, curated database of ground truth electrophysiological recordings, displaying results interactively on continuously updating website.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Open source graphical viewer for time series calcium imaging evaluation and pre-processing.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software tool for real time processing of electrophysiological data.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Open source software application for neurophysiology data acquisition and analysis. Program is based in MatLab, and evolved from earlier open source software package called Ephus.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software tool to read MedPC data into Python and Matlab. MedPC code for saving precise times of behavioral events and MatLab and Python functions to convert MedPC data into time event codes.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software tool for analysis of mouse position data.Open source software to analyze positions of individual mice, specifically their nose positions, in behavioral arena with the goal of minimizing error.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software Python tool to processes raw macaque fMRI images using algorithms embedded in automatic pipeline.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software tool for high speed eye tracking for Point Gray USB3.0 cameras.Oculomatic software tracks eye position within acquired image frame at frame rate dictated by image sensor.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software MATLAB package for high throughput ultrasonic vocalizations detection, classification, and analysis.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Integrated, open source mouse tracking software package.Software plugin to record and analyze mouse movements in computerized lab experiments.Software plugin provides two items that implement mouse tracking in OpenSesame.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

FPGA code for running main board of flyPAD. Code written in VHDL using Quartus 2 web edition software.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Distribution package for Dual Port Lick Detector.Package includes files relevant to building lick detector.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth