Curator Dashboard

Software essential for running the FLEXMAP 3D w/xPONENT 4.3 platform. Used to control instrument operations, manage data acquisition, and perform analysis for high-throughput multiplex assays. It enables automated maintenance, 96/384-well plate compatibility, and, in many cases, diagnostic, IVD, or research-use-only testing. Intended to measure and sort multiple signals generated in an in vitro diagnostic assay from a clinical sample.

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• 5 months ago - by Anonymous

Software tool that predicts cancer metabolic fluxes from bulk RNA-seq and scRNA-seq data to address these analytic gaps. Used for characterizing metabolic circuits and output non-degenerative fluxes using cancer gene expression data.

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• 5 months ago - by Anonymous

Core facility specializes in the analysis of key metabolites for metabolic diseases. Develops and performs targeted methods for quantifying water-soluble and lipid metabolites.

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• 5 months ago - by Anonymous

Joint facility of the Charité - Universitätsmedizin Berlin and the Humboldt Universität zu Berlin. Research dedicated neuroimaging facility with two state of the art Siemens 128-channel 3 Tesla MRI systems equipped for cognitive, neurological and psychiatric experiments.

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• 5 months ago - submitted by Stefan Hetzer

Core provides expertise, training and instrumentation for a range of advanced light microscopy techniques across scales and for a variety of samples. We offer wide-field, confocal, high-content, light sheet and multi-photon imaging systems for cell and tissue studies.

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• 5 months ago - submitted by Andreas Bruckbauer

French public engineering school and research university founded in 1972, located in Compiègne. It combines the structure of a university with a Grande École, offering specialized, interdisciplinary programs in engineering, technology, and biotechnology, often blending French and North American educational styles.

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• 5 months ago - submitted by Edyta Vieth

Specialized research and technical core at the Université de Technologie de Compiègne (UTC), specifically within the BMBI (Bio-Mechanics and Bio-Engineering) CNRS lab, dedicated to the engineering of biological systems. Designed to support training, research, and development activities in the healthcare field, acting as a bridge between engineering and biology. Integrates complementary technological facilities dedicated to the engineering, production, culture, and characterization of biological systems, ranging from simple models to complex structures. It brings together expertise covering the entire experimental workflow, from the design and fabrication of technological devices and biological supports to their cultivation, monitoring, and functional analysis.

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• 5 months ago - by Anonymous

Software R package providing functions to assist cellular neighborhood analysis of any spatial transcriptomics data with single-cell resolution. Spatial cellular neighbourhood scanning in R.

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• 5 months ago - by Anonymous

Software Julia package for data clustering. Clustering algorithms for the Julia programming language including k-means, hierarchical clustering, DBSCAN, and affinity propagation.

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• 5 months ago - by Anonymous

Software library within Julia ML ecosystem (JuliaML) designed for managing machine learning pipelines. Utilities for machine learning in Julia including data splitting, shuffling, batching, and preprocessing operations.

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• 5 months ago - by Anonymous

Open-source machine-learning software library and ecosystem written in Julia. Machine learning library for the Julia programming language providing tools for building neural networks including layers, optimizers, and automatic differentiation.

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• 5 months ago - by Anonymous

Web optimization tool for codon adaptation-based control of protein expression in C. elegans.

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• 5 months ago - by Anonymous

Core provides services including processing and production of cell therapy products for clinical use, expertise in translation of cellular therapies to the clinic, and instrumentation supporting the development of novel immunotherapy strategies and insights on mechanisms of action for effective therapies.

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• SciCrunch
• 5 months ago - submitted by Edyta Vieth

Web interactive set of tools for sampling and randomization of data sets and generation of random patterns. The tools include randomization and permutation of data (even stratified random sampling) and random assignments for studies, generation of random numbers following specific probability distributions, generation of random and quasi-random point distributions and sampling patterns, noise in one or two dimensions with adjustable spectral properties, random walks and Lévy flights. Own data tables can be provided for random sampling in a privacy-friendly way, as data processing takes place directly in the browser and no data is transferred to anywhere else. Random Number Lab also offers some educational material and worksheets and can be used for scientific and educational purposes.

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• 5 months ago - by Anonymous

Software R package for clustering and cluster validation. Fixed point clustering. Linear regression clustering. Clustering by merging Gaussian mixture components. Symmetric and asymmetric discriminant projections for visualisation of the separation of groupings. Cluster validation statistics for distance based clustering including corrected Rand index. Standardisation of cluster validation statistics by random clusterings and comparison between many clustering methods and numbers of clusters based on this. Cluster-wise cluster stability assessment

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• 5 months ago - by Anonymous

Software R package for functional enrichment on genomic regions. Functional enrichment analysis directly performed on genomic regions.

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• 5 months ago - by Anonymous

Software application for de novo identification and extraction of differentially methylated regions (DMRs) from the human genome using Whole Genome Bisulfite Sequencing (WGBS) and Illumina Infinium Array (450K and EPIC) data. Provides functionality for filtering probes possibly confounded by SNPs and cross-hybridisation. Includes GRanges generation and plotting functions.

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• 5 months ago - by Anonymous

Software application for simultaneous genetic and epigenetic inference in bulk and single-cell studies. Used to perform alignment, DNA methylation and mutation calling, and allele specific methylation from bisulfite sequencing data. Analyzing sodium bisulfite conversion-based DNA methylation/modification data.

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• 5 months ago - by Anonymous

Software R package for reference sequence checksums for provenance identification in RNA-seq. Performs numerous annotation and metadata gathering tasks on behalf of users during the import of transcript counts and abundance from quantification tools such as salmon. Data are imported as SummarizedExperiment objects with associated GenomicRanges metadata. Correct metadata is added automatically via reference sequence digests, facilitating genomic analyses and assisting in computational reproducibility.

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• 5 months ago - by Anonymous

Specialized research and graduate training university in Quebec, Canada, founded in 1969. It is the only institution in Quebec dedicated exclusively to graduate studies (master's and doctoral level) and applied research in four key strategic sectors: water/environment, energy/materials/telecommunications, urbanization/culture, and health/biotechnology.

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• 5 months ago - submitted by Edyta Vieth