Curator Dashboard

Software tool to automate various fly handling tasks.Control software for Drosophila handling robot MAPLE.

• Resource
• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software 3D graphics python package for cognitive psychology experiments. Open source, cross platform Python library that adds 3D stimulus support to all OpenGL-based 2D Python stimulus libraries. These libraries include VisionEgg, Psychopy, Pyglet, and PyGam.

• Resource
• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Open access high throughput pipeline and database for rodent touchscreen based cognitive assessment.Integration of touchscreen cognitive testing with open access database public repository as well as Web platform for knowledge dissemination.

• Resource
• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Portal provides protocol that implements JAABA, open source machine learning based behavior detection system; motr, open-source mouse trajectory tracking software; and bonsai, open source system capable of streaming and recording video. Together they use these tools to process videos of mice performing grooming behaviors in variety of behavioral setups.

• Resource
• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Portal provides low profile in vivo imaging support and restraint system for mice. System is compact and provides sturdy head fixation, gas anesthesia mask, and warm water bed. Compact design allows to work with variety of microscope stages and use of 3D printed components makes this design customizable.

• Resource
• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Portal provides novel head cap and microdrive design for chronic multi electrode recordings in rats through use of 3D printing technology. Head cap and microdrive designs can be fabricated at little cost using consumer grade 3D printers.

• Resource
• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Portal provides Arduino controlled stimulus isolator that allows for highly accurate, reproducible automated setting of stimulation currents. Automatic stimulation patterns are software controlled and parameters are set from Matlab coded simple, intuitive and user friendly graphical user interface.

• Resource
• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Portal provides touchscreen platform developed by Texas Christian University scientists. iPad apparatus set up consists of four wall operant chamber, remote desktop program, Visual Basic 6 software, and single wireless iPad. Wireless iPad allows for flexibility in setups during performing visual discrimination behavioral experiments.

• Resource
• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Portal provides open source nose poke system utilizing Arduino microcontroller, several low cost electronic components, and PVC behavioral arena. System developed by University of Basel scientists for use in behavior experiments.

• Resource
• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Portal provides system of two multi camera head mounts for mice in order to record physiological changes in certain behaviors. System used for video tracking of rodents behavior.

• Resource
• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Portal provides radar based motion detector for home cage activity monitoring in mice. System is used for motion detection without visual contact to animal and can be used with various cage types. Features custom printed circuit board and motion detector shield for Arduino, which saves raw activity and timestamped data in CSV files onto SD card.Developed by Max Planck Institute of Psychiatry scientists. Authors also provide Python script for data analysis and generation of actograms.

• Resource
• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Portal provides open source lickometer that utilizes readily available or customizable components such as PC sound card and 3D printed drinking bottle holder. System consists of apparatus itself and open source software to collect and analyze data. Recording of raw data is handled by Audacity, open source audio program.

• Resource
• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Portal provides open source, RFID-based system for automated measurement and analysis of social preference and in-cohort sociability in mice. System was developed by Nencki Institute of Experimental Biology scientists.

• Resource
• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Portal provides open source Compact Head Mounted Endoscope for imaging in freely behaving mouse. Includes accessible and flexible set of calcium imaging tools for neuroscience research community.

• Resource
• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Portal provides open Source 3-D Printed Modular micro drive system for acute primate neurophysiology.

• Resource
• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Portal provides software tool for analysis and quantification of both single and socially interacting zebrafish. Software data extraction and analysis tool built in open source R language for tracking zebrafish behavior.

• Resource
• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Portal provides system of robotic artificial flowers to study bumble bee behavior. System is designed to capture data when animal is feeding by placement of IR beams that are broken when engaged on flowers feeding mechanism and sends data to control unit.Developed by University of Oulu in Finland scientists. System includes control unit, separate artificial flowers, and personal computer. Control unit is to handle electronics of flowers, collect data from them, and to send data to computer. Flowers contain infrared sensor, their associated electronics, and electromechanical device that offers small, precise amount of sugar solution from reservoir. Computer runs software that controls refilling rate and data collection via the control unit. Circuit diagrams, parts list, and control software and source code are available in paper supplemental information.

• Resource
• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Sofware tool for use with NINscope.

• Resource
• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Portal provides open source neural recording device for wireless transmission of local field potential data in freely behaving animals. Used for electrophysiological recording of local field potentials in freely behaving animals.

• Resource
• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Portal provides MouseMove software system used to analyze Open Field behavior of mice after experimental stroke to show reduced locomotor activity and to quantify laterality deficits. System is used in combination with open source program ImageJ and MTrack2 plugin to analyze pre recorded Open Field test video. System has two downloadable components, ImageJ macro and separate program with custom built MouseMove GUI. ImageJ is used to subtract background video from experiment and create image of animals total trajectory. MouseMove GUI then completes detailed analysis of movement patterns, measuring fractional time spent stationary, distance traveled, speed mean and various details of laterality.

• Resource
• SciCrunch
• 5 years ago - submitted by Edyta Vieth