Curator Dashboard

Core offers services in advancing scientific research in the field of chemistry. Provides Scanning Electron Microscopy (SEM), Atomic Force Microscopy (AFM), Confocal Laser Scanning Microscopy (CLSM), and Optical Microscopy. Offers sample preparation techniques, including ultramicrotome, ultracryomicrotome, and sputter coating,training and technical support.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Repository of rejections of papers - letters and comments - that were ultimately accepted by a journal to educate others. Your rejection letters and comments are welcome. Some journals have begun including reviewers' comments with accepted papers to make the views of experts available to the reader. However, often the paper has been submitted to several journals and rejected before it is finally accepted. The rejection letters and comments are equally useful in helping to judge what kind of papers might be acceptable to a journal, and what kind of comments lead to rejections. Rather than hiding these low points in the trajectory of a scientific paper, this forum offers a place to publish these letters and comments to educate others.

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• SciCrunch
• 14 years ago - by Anonymous

Database that integrates evidence on disease-gene associations from automatic text mining, manually curated literature, cancer mutation data, and genome-wide association studies. It also assigns confidence scores that facilitate comparison of the different types and sources of evidence.

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• RRID-Legacy
• 9 years ago - submitted by Daniel Himmelstein

Network for monitoring waves and beaches and prediction of waves and shoreline change along coastlines of United States. Since 1975 program has produced database of publicly accessible environmental data for use by coastal engineers and planners, scientists, mariners, and marine enthusiasts. Forefront of coastal monitoring, developing numerous innovations in instrumentation, system control and management, computer hardware and software, field equipment, and installation techniques. Operated by Ocean Engineering Research Group, part of Integrative Oceanography Division at Scripps Institution of Oceanography. CDIP measures, analyzes, archives and disseminates coastal environment data for use by coastal engineers, planners and managers, as well as scientists and mariners.

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• RRID
• 3 years ago - submitted by Edyta Vieth

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 14,2026. Integrated database of genomic, expression and protein data for Drosophila, Anopheles, C. elegans and other organisms. You can run flexible queries, export results and analyze lists of data. FlyMine presents data in categories, with each providing information on a particular type of data (for example Gene Expression or Protein Interactions). Template queries, as well as the QueryBuilder itself, allow you to perform searches that span data from more than one category. Advanced users can use a flexible query interface to construct their own data mining queries across the multiple integrated data sources, to modify existing template queries or to create your own template queries. Access our FlyMine data via our Application Programming Interface (API). We provide client libraries in the following languages: Perl, Python, Ruby and & Java API

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• SciCrunch
• 17 years ago - by Anonymous

A script to convert Bam alignments into a wig representation file.

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• RRID-Legacy
• 9 years ago - by Anonymous

Software R package as visual exploratory tool on correlation matrix that supports automatic variable reordering to help detect hidden patterns among variables.Used for graphical display of correlation matrix, confidence interval. Contains some algorithms to do matrix reordering. Good at details, including choosing color, text labels, color labels, layout, etc.

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• RRID
• 3 years ago - by Anonymous

A software package that provides a comprehensive set of functions for parsing, viewing and modifying BioPAX pathway data within R. At the moment BioPAX level 2 and level 3 are supported.

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• SciCrunch
• 12 years ago - by Anonymous

Database of mouse brain cell type-specific gene expression datasets. NeuroExpresso is able to demonstrate the use of marker genes for acquiring cell type specific information from whole tissue expression.

• RRID-Legacy
• 9 years ago - submitted by Burak Ogan Mancarci

Core contains instrumentation and expertise for fabrication, characterization, and testing of biomedical devices, sensors, and systems. Core administratively combines 4 existing engineering cores: the Idaho Microfabrication Laboratory (IML); Boise State Center for Materials Characterization (BSCMC); Research Machining and Engineering (RME) center; and Biomechanics and Mechanobiology (BMMB) facility.Offers variety of instruments including 3D printers, deposition and photolithography tools, profilometers, SEM, TEM, light microscopy, confocal microscopy, cell culture. Offers services including design, machining, imaging, etc.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Abbreviated reference atlas for the P56 mouse. All sections were nissl stained and digitized. To assist in the initial identification of sites of gene expression sites, maps of brains are available for E15.5, P7 and the adult. These maps depict the boundaries of major brain regions (cortex, thalamus, striatum, globus pallidus, ventral striatum, septum, basal forebrain, hippocampus, midbrain, pons, medulla, cerebellum) and also show the more prominent nerve tracts. Maps are most efficiently used by placing the window depicting the map of interest next to the gene expression image. Browsing is permitted between planes of sectioning thus allowing the most appropriate plane to be selected. Abbreviations are found in a list accessed by clicking the see abbreviation link at the bottom of each map. Alternatively, passing the cursor directly across the abbreviation on the map will result in the appearance of the appropriate term in the rider on top of the map panel. The annotation of anatomical details such as brain nuclei is currently beyond the scope of the GenePaint database. Hence, such information on the anatomy of the brain and embryo should be obtained from published atlases of mouse anatomy (Kaufman, 1995; Paxinos and Franklin, 2001; Jacobowitz and Abbott, 1997; Schambra et al., 1992; Valverde1998).

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• SciCrunch
• 17 years ago - by Anonymous

Software toolkit for atomistic simulations to explore how carbohydrates function. Applications include the preparation of structures for glycolipids, nanocellulose, and glycans linked to glycoproteins.

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• SciCrunch
• 9 years ago - submitted by Fabio Lolicato

Open source platform to support management of educational audio and video content. Institutions can use Opencast to produce lecture recordings, manage existing video, serve designated distribution channels, and provide user interfaces to engage students with educational videos.

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• RRID
• 3 years ago - submitted by Manuel Oellers

A database designed for plant comparative and functional genomics based on complete genomes. It comprises complete proteome sequences from the major phylum of plant evolution. The clustering of these proteomes was performed to define a consistent and extensive set of homeomorphic plant families. Based on this, lists of gene families such as plant or species specific families and several tools are provided to facilitate comparative genomics within plant genomes. The analyses follow two main steps: gene family clustering and phylogenomic analysis of the generated families. Once a group of sequences (cluster) is validated, phylogenetic analyses are performed to predict homolog relationships such as orthologs and ultraparalogs.

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• SciCrunch
• 17 years ago - by Anonymous

Method for uncovering mutations from RNA sequencing datasets that could be useful in further functional analysis. It also allows orthogonal validation of DNA-based mutation discovery by providing complementary sequence variation analysis from paired RNA/DNA sequencing data sets.

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• SciCrunch
• 9 years ago - submitted by Lisa Neums

Core supports areas of research from Heavy Structures and Concrete design, fabrication and testing to Non-Destructive Testing, development and construction of novel fibre, polymers and composite materials.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Collection of images from cell type-specific protein expression in retina using BAC transgenic mice. Images from cell type-specific protein expression in retina using BAC transgenic mice from GENSAT project.

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• SciCrunch
• 15 years ago - by Anonymous

Project portal for a collaboration between Boston Children’s Hospital, Cincinnati Children’s Hospital Medical Center, and the University of California Los Angeles with funding from NIH NCATS. It aims to support investigators to rapidly translate complex gene and cell therapies to early phase, investigator-initiated clinical trials.

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• dkNET
• 9 years ago - submitted by Ko-Wei Lin

Glycomics Core provides services, instrumentation and expertise in glycomics. Services include Glycan Microarrays,Glycan analysis by Mass Spectrometry, Distribution of specific reagents,Trainings.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

A community portal for sharing and integration of human protein data that allows research laboratories to contribute and maintain protein annotations. The Human Protein Reference Database (HPRD) integrates data that is deposited along with the existing literature curated information in the context of an individual protein. Data pertaining to post-translational modifications, protein-protein interactions, tissue expression, expression in cell lines, subcellular localization and enzyme substrate relationships can be submitted.

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• SciCrunch
• 17 years ago - by Anonymous