Curator Dashboard

Software tool as fast principal component analysis of large scale genome wide data. FlashPCA performs fast principal component analysis (PCA) of single nucleotide polymorphism (SNP) data. FlashPCA2 used for principal component analysis of biobank scale genotype datasets.

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• RRID-Legacy
• 5 years ago - by Anonymous

International, community based, nongovernmental, and nonprofit organization promoting sustainable and trustworthy data infrastructures governed by Standards and Certification Board. Offers to any data repository core level certification based on tDSA–WDS Core Trustworthy Data Repositories Requirements catalogue and procedures. CoreTrustSeal Data Repository certification replaces the DSA certification and WDS Regular Members certification.

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• RRID-Legacy
• 5 years ago - by Anonymous

Portal to release connectivity and functional imaging data collected by consortium of laboratories led by groups at Allen Institute for Brain Science, Princeton University, and Baylor College of Medicine, with support from broad array of teams, coordinated and funded by IARPA MICrONS program. Data include large scale electron microscopy based reconstructions of cortical circuitry from mouse visual cortex, with corresponding functional imaging data from those same neurons.

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• dkNET
• 5 years ago - submitted by Maryann Martone

Platform to manage and curate large scientific datasets. Used for scientific data management and analysis.Provides advanced functionality to organize files and complex metadata describing datasets and allows users to interact, search, and analyze these data through web application or programmatically using Python client. Provides end-to-end solution for publishing datasets through Blackfynn Discover, assigning DOIs and ensuring that published data becomes available to larger academic community in sustainable and FAIR manner.

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• dkNET
• 5 years ago - submitted by Jeffrey Grethe

Software tool as interface for designing and presenting visual stimuli.

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• SciCrunch
• 5 years ago - submitted by Ben Murphy-Baum

Software R package to calculate probability of freedom from disease in population based on surveillance data.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software R package for design and analysis of disease surveillance activities. These functions were originally developed for animal health surveillance activities but can be equally applied to aquatic animal, wildlife, plant and human health surveillance activities. Utilities are included for sample size calculation and analysis of representative surveys for disease freedom, risk-based studies for disease freedom and for prevalence estimation.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software R package for analysis of epidemiological and surveillance data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on basis of single or multiple strata of count data presented in contingency table, computation of confidence intervals around incidence risk and incidence rate estimates and sample size calculations for cross-sectional, case-control and cohort studies. Surveillance tools include functions to calculate appropriate sample size for 1- and 2-stage representative freedom surveys, functions to estimate surveillance system sensitivity and functions to support scenario tree modelling analyses.

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• RRID-Legacy
• 5 years ago - by Anonymous

KLH conjugated Synthetic peptide corresponding to Mouse BrdU

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• RRID-Legacy
• 5 years ago - submitted by shenghui liu

Software tool for prediction of lysine acetyltransferase specific modification sites from protein sequences.

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• RRID-Legacy
• 5 years ago - submitted by Jiayi Wan

Software tool to make artificial RNAseq datasets with circRNA reads. Specific simulation tool for non-canonical transcripts. Takes FASTA-formatted reference file and GTF annotation file as input, and generates circular and linear RNA sequences.

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• RRID-Legacy
• 5 years ago - by Anonymous

Core provides technology platforms and services for single cell, in situ, and multiomic analysis for cutting edge immunology research and clinical studies to help make impactful discoveries and develop improved treatments for human diseases. Services include Spectral flow cytometry (Cytek Aurora), Imaging mass cytometry (Fluidigm Hyperion), CyTOF mass cytometry (Fluidigm Helios).

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software pipeline for creating harmonized single cell RNA-seq dataset for retina with publicly available data. Platform for analysis of single cell eye in disk. Snakefile based process to turn 1.4 million ocular cells into unified meta-atlas. Meta-atlas that compiles 1.2 million single-cell back of the eye transcriptomes across studies, publications, and species.

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• SciCrunch
• 5 years ago - submitted by David McGaughey

Software pipeline for creating harmonized single cell RNA-seq dataset for retina with publicly available data. Platform for analysis of single cell eye in disk. Snakefile based process to turn 1.4 million ocular cells into unified meta-atlas. Meta-atlas that compiles 1.2 million single-cell back of the eye transcriptomes across studies, publications, and species.

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• SciCrunch
• 5 years ago - submitted by David McGaughey

High level, high performance, dynamic language for technical computing. It is a type system with parametric polymorphism in dynamc programming language.

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• RRID-Legacy
• 5 years ago - by Anonymous

Whippet it is a bioinformatic tool to quantify alternative splicing events, intron retention and circRNA isoforms from RNAseq data. easy-to-use RNA-seq analysis method that rapidly-with hardware requirements compatible with a laptop-models and quantifies AS events of any complexity without loss of accuracy. Using an entropic measure of splicing complexity, Whippet reveals that one-third of human protein coding genes produce transcripts with complex AS events involving co-expression of two or more principal splice isoforms. We observe that high-entropy AS events are more prevalent in tumor relative to matched normal tissues and correlate with increased expression of proto-oncogenic splicing factors. Whippet thus affords the rapid and accurate analysis of AS events of any complexity, and as such will facilitate future biomedical research.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software package for comprehensive and integrative circular RNA analysis. It is the successor of CIRCexplorer with plenty of new features to facilitate circular RNA identification and characterization. Used to annotate circRNAs, de novo assemble novel circular RNA transcripts and chracterize various of alternative (back-)splicing events of circular RNAs.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software tool as computational pipeline for circular and linear RNA expression analysis from ribosomal-RNA depleted RNA-seq. CIRCexplorer3-CLEAR is CLEAR pipeline for direct comparison of circular and linear RNA expression.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software tool for circRNA detection from RNAseq reads. Python code to detect head-to-tail spliced (back-spliced) sequencing reads, indicative of circular RNA in RNA-seq data.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software Python package for accurate circRNA quantification and differential expression analysis. Comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data. Accurate quantification of circular RNAs identifies extensive circular isoform switching events.

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• RRID-Legacy
• 5 years ago - by Anonymous