SciCrunch

Software toolkit incorporating gamma series methods and sliding window strategies. Used for calculating nonsynonymous (Ka) and synonymous (Ks) substitution rates for evaluating sequence variations for protein orthologs across different species or taxonomical lineages with unknown evolutionary status.

Resource
RRID-Legacy
5 years ago - submitted by Fan Jiang

MCScanX

Software toolkit for detection and evolutionary analysis of gene synteny and collinearity.

Resource
RRID-Legacy
5 years ago - submitted by Fan Jiang

RAxML Next Generation

Software phylogenetic tree inference tool which uses maximum likelihood optimality criterion. Used for maximum likelihood phylogenetic inference. Offers improved accuracy, flexibility, speed, scalability, and usability compared with RAxML/ExaML.

Resource
RRID-Legacy
5 years ago - submitted by Fan Jiang

Tandem Repeats Finder

Software tool to locate and display tandem repeats in DNA sequences. Used to analyze DNA sequences.

Resource
RRID-Legacy
5 years ago - submitted by Fan Jiang

TERL

Software tool for classification of transposable elements by convolutional neural networks. Preprocesses and transforms one dimensional sequences into two dimensional space data, image like data of sequences, and apply it to deep convolutional neural networks.

Resource
RRID-Legacy
5 years ago - submitted by Fan Jiang

EDTA

Software package to filter out false discoveries in raw TE candidates and generate high quality non redundant TE library for whole genome TE annotations.Produces filtered non redundant TE library for annotation of structurally intact and fragmented elements.

Resource
RRID-Legacy
5 years ago - submitted by Fan Jiang

Anti- AGE antibody, Catalog no- AB 9890

Anti-AGE (Advanced Glycated End-products) Antibody detects level of AGE (Advanced Glycated End-products) & has been published & validated for use in ELISA & WB

Resource
RRID-Legacy
5 years ago - submitted by Amit Garg

fastai

Software python package simplifies training fast and accurate neural nets using modern best practices.

Resource
RRID-Legacy
5 years ago - submitted by Nico Riedel

antiSMASH

Web tool for detecting and characterising biosynthetic gene clusters in bacteria and fungi. AntiSMASH 6 increases number of supported cluster types from 58 to 71, displays modular structure of multi modular BGCs, adds new BGC comparison algorithm, allows for integration of results from other prediction tools, and detects tailoring enzymes in RiPP clusters.

Resource
RRID-Legacy
5 years ago - by Anonymous

JSpeciesWS

Web server for prokaryotic species circumscription based on pairwise genome comparison. Service for in silico calculating extent of identity between two genomes, parameter routinely used in process of polyphasic microbial species circumscription. Service measures average nucleotide identity.

Resource
RRID-Legacy
5 years ago - by Anonymous

MeDuSa

Web server of multi draft based scaffolder.Exploits information obtained from set of genomes from related organisms to determine correct order and orientation of contigs.

Resource
RRID-Legacy
5 years ago - by Anonymous

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