Curator Dashboard

Software package as nucleus caller for single-nucleus RNA sequencing data. Distinguishes between nuclei and empty droplets by combining summary metrics of cell barcodes—such as total UMI counts, fraction of intronic reads, and percentage of mitochondrial reads. It also incorporates gene expression to learn signatures characteristic of empty droplets.

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• RRID
• 5 months ago - by Anonymous

Provides genomics, proteomics, and bioinformatic services, including next-generation-based genome, microbiome and metagenome sequencing, gene expression and transcriptome analysis, and proteome analysis. CAGEF has established internationally-recognized genomics expertise in the analysis of non-standard species, systems, and environments, with particular experience in microbial, plant, and environmental genomics and metagenomics.

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• SciCrunch
• 5 months ago - submitted by Edyta Vieth

Private university in Chicago, Illinois, United States. Founded in 1972, it is the academic arm of Rush University Medical Center.

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• 5 months ago - submitted by Edyta Vieth

Core that provides magnetic resonance imaging (MRI) services and image analysis. Facility contains 3 Tesla Siemens Prisma MRI scanner, variety of head and body receive coils (including 64-channel head coil), and extensive list of pulse sequences and packages providing advanced, accelerated whole-body imaging capabilities. Houses Nordic Neuro Lab hardware and software for functional MRI stimulus delivery, collecting subject feedback, and eye tracking.

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• 5 months ago - by Anonymous

Code to support closed-loop control of cutaneous optical stimulation in freely behaving mice, enabling controlled somatosensory input during movement in naturalistic settings.

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• 5 months ago - submitted by Liam Browne

Contract Research, Development, and Manufacturing Organization (CRDMO) supporting the life sciences industry. Founded in 2004, it provides comprehensive services for small molecules, biologics, and cell and gene therapies (CGT) from discovery to commercialization. Offers integrated R&D, laboratory services, and manufacturing.

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• 5 months ago - by Anonymous

Software package provides implementation of the inference pipeline of AlphaFold 3.

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• 5 months ago - by Anonymous

Software simulation and documentation package for DNA assembly strategies using Python.

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• 5 months ago - by Anonymous

Open community portal for multi-species mammalian adipose biology. Aggregates data for adipose tissues and cell types, genes active within them, and their relationship to human phenotypes. Plans to offer reproducible analysis pipelines, wet lab and computational protocols, datasets, analyses, and visualizations for epigenomic, transcriptomic, proteomic, metabolomic, and imaging data. Designed to aggregate and harmonize multi-species (human and mouse) transcriptomic, genetic, and epigenomic data. Enables to explore adipose biology, cell-type-specific gene expression, and metabolic disease mechanisms through interactive tools like Single Cell Browsers.

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• dkNET
• 5 months ago - submitted by Maryann Martone

Web application to plan and document cloning and genome engineering. Open source and open access tool, FAIR data principles compatible, designed to simulate and/or document genetic manipulation processes used in every day synthetic biology and molecular biology.

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• 5 months ago - submitted by Luisa Fernanda Jimenez Soto

BiOptic Qsep400 is high-throughput, 4-channel automated capillary gel electrophoresis system designed for fast, accurate size and concentration analysis of DNA, RNA, and protein samples. It acts as a rapid quality control tool for NGS libraries, PCR fragments, and antibody purity in high-volume research and clinical labs.

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• 5 months ago - by Anonymous

Fluorescence cell analyzer designed for cell counting and viability detection. It can analyze up to 6 samples per run and supports both bright-field and fluorescence counting modes.

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• 5 months ago - by Anonymous

Chinese biotechnology company based in Beijing that designs and manufactures single cell sequencing technology used in scientific research. Company specializing in high-throughput single-cell multi-omics technology, providing tools, kits, and platforms for single-cell DNA methylation, RNA sequencing, and immune repertoire profiling. Founded in 2018, it offers the SeekOne™ Digital Droplet System.

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• 5 months ago - by Anonymous

Automated instrument for single cell partitioning, capture, and labeling based on principle of microfluidics. In addition to general sample types, the DD system is particularly suitable for highly fragile cells, such as brain tissue, retinal tissue, and all tissues from aged individuals.

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• 5 months ago - by Anonymous

Software package that allows users to use the Intel MKL library for Julia's underlying BLAS and LAPACK, instead of OpenBLAS, which Julia ships with by default. Julia interface to Intel Math Kernel Library for accelerated linear algebra.

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• RRID
• 5 months ago - by Anonymous

Luminex 200 Instrument System is a high-throughput, flow cytometry-based, multiplexing analyzer designed for labs to simultaneously detect and quantify up to 100 different proteins or nucleic acids (analytes) from a single, small-volume biological sample. It is primarily used for research (RUO), including biomarker studies, drug discovery, and immunology.

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• 5 months ago - by Anonymous

Software essential for running the FLEXMAP 3D w/xPONENT 4.3 platform. Used to control instrument operations, manage data acquisition, and perform analysis for high-throughput multiplex assays. It enables automated maintenance, 96/384-well plate compatibility, and, in many cases, diagnostic, IVD, or research-use-only testing. Intended to measure and sort multiple signals generated in an in vitro diagnostic assay from a clinical sample.

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• 5 months ago - by Anonymous

Software tool that predicts cancer metabolic fluxes from bulk RNA-seq and scRNA-seq data to address these analytic gaps. Used for characterizing metabolic circuits and output non-degenerative fluxes using cancer gene expression data.

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• 5 months ago - by Anonymous

Core facility specializes in the analysis of key metabolites for metabolic diseases. Develops and performs targeted methods for quantifying water-soluble and lipid metabolites.

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• 5 months ago - by Anonymous

Joint facility of the Charité - Universitätsmedizin Berlin and the Humboldt Universität zu Berlin. Research dedicated neuroimaging facility with two state of the art Siemens 128-channel 3 Tesla MRI systems equipped for cognitive, neurological and psychiatric experiments.

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• 5 months ago - submitted by Stefan Hetzer