Curator Dashboard

A grassroots initiative dedicated to accelerating the scientific community''''s understanding of the neural basis of ADHD through the implementation of open data-sharing and discovery-based science. They believe that a community-wide effort focused on advancing functional and structural imaging examinations of the developing brain will accelerate the rate at which neuroscience can inform clinical practice. The ADHD-200 Global Competition invited participants to develop diagnostic classification tools for ADHD diagnosis based on functional and structural magnetic resonance imaging (MRI) of the brain. Applying their tools, participants provided diagnostic labels for previously unlabeled datasets. The competition assessed diagnostic accuracy of each submission and invited research papers describing novel, neuroscientific ideas related to ADHD diagnosis. Twenty-one international teams, from a mix of disciplines, including statistics, mathematics, and computer science, submitted diagnostic labels, with some trying their hand at imaging analysis and psychiatric diagnosis for the first time. The data for the competition was provided by the ADHD-200 Consortium. Consortium members from institutions around the world provided de-identified, HIPAA compliant imaging datasets from almost 800 children with and without ADHD. A phenotypic file including all of the test set subjects and their diagnostic codes can be downloaded. Winner is presented. The ADHD-200 consortium included: * Brown University, Providence, RI, USA (Brown) * The Kennedy Krieger Institute, Baltimore, MD, USA (KKI) * The Donders Institute, Nijmegen, The Netherlands (NeuroImage) * New York University Medical Center, New York, NY, USA (NYU) * Oregon Health and Science University, Portland, OR, USA (OHSU) * Peking University, Beijing, P.R.China (Peking 1-3) * The University of Pittsburgh, Pittsburgh, PA, USA (Pittsburgh) * Washington University in St. Louis, St. Louis, MO, USA (WashU)

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• SciCrunch
• 15 years ago - by Anonymous

Web service for prediction of SUMOylation sites and SUMO-interaction motifs in proteins by CUCKOO Workgroup.

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• RRID-Legacy
• 7 years ago - by Anonymous

Core provides monoclonal antibody production services. Provides consultation to assist investigator in all aspects of monoclonal antibody production. Services are performed under strict quality control guidelines appropriate for antibodies that may have commercial potential.

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• RRID
• 1 year ago - submitted by Matthew Rudy

An open, web-based system designed to aid researchers in the analysis of genomic data by providing a platform for the creation of bioinformatic workflows. Scientific workflows are created within the system by recording tasks performed by the user. These tasks may include querying multiple, distributed data sources, saving query results as searchable data extracts, and executing local and web-accessible analytic tools. The series of recorded tasks can then be saved as a reproducible, sharable workflow available for subsequent execution with the original or modified inputs and parameter settings. Integrated data resources include interfaces to the National Center for Biotechnology Information (NCBI) nucleotide and protein databases, the European Molecular Biology Laboratory (EMBL-Bank) non-redundant nucleotide database, the Universal Protein Resource (UniProt), and the UniProt Reference Clusters (UniRef) database. The system offers access to numerous preinstalled, curated analytic tools and also provides researchers with the option of selecting computational tools from a large list of web services including the European Molecular Biology Open Software Suite (EMBOSS), BioMoby, and the Kyoto Encyclopedia of Genes and Genomes (KEGG). The system further allows users to integrate local command line tools residing on their own computers through a client-side Java applet.

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• SciCrunch
• 13 years ago - by Anonymous

Consortium encompasses computing capabilities from powerful and advanced computers in the world. Used to empower researchers to accelerate understanding of COVID-19 virus and development of treatments and vaccines to help address infections. Teams who receive Consortium access will publish their results in open scientific literature. All supported projects will have name of principal investigator, project title and project abstract posted to COVID-19 HPC Consortium web site.

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• RRID-Legacy
• 7 years ago - submitted by Edyta Vieth

Core assists in evaluating disease and its cure within complete biological system. Combines expertise and instrumentation to assist investigations on the mechanisms of disease development, to enable the evaluations of drug efficacy and resistance, and to provide the means for testing novel strategies and devices for disease detection and drug delivery.

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• SciCrunch
• 1 year ago - submitted by Edyta Vieth

The primary mission of the Nancy Lurie Marks (NLM) Family Foundation is to help people with autism lead fulfilling and rewarding lives. The Foundation is committed to understanding autism from a scientific perspective, increasing opportunities and services available to the autism community and educating the public about autism. In pursuit of its mission, the Foundation develops and provides grants to programs in research, clinical care, policy, advocacy and education. Founded by Nancy Lurie Marks over 25 years ago, the NLM Family Foundation is one of the largest supporters of initiatives in these areas. The principal goal of the scientific program is to achieve a deeper understanding of the biological basis of autism, focusing on genetics, synaptic chemistry, the neurobiology of communication, systems biology and the physiology of movement. The Foundation funds peer-reviewed research, the development of collaborative investigator projects, and research fellowship programs. Through sponsorship of scientific conferences, symposia and workshops, the Foundation seeks to encourage innovation and provide a springboard to generate new avenues of shared inquiry. The NLM Family Foundation supports programs which focus on novel ways to improve the communication and social abilities of those with autism. Other programs are designed to increase advocacy for legal rights and access to support services for persons with autism, and to increase community understanding and openness to inclusion through education and documentary films.

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• SciCrunch
• 15 years ago - by Anonymous

Serves as clearinghouse for monoclonal antibodies against SARS-CoV-2. Database will catalog contributed antibodies in searchable resource and provide interactive analysis tools for comparisons among them. Most potent antibodies will guide development of vaccines to stop current outbreak and protect against future pandemics.

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• rapid-viraldb
• 7 years ago - submitted by Jeffrey Grethe

Laboratory is equipped with sample preparation and analysis equipment that support established analytical procedures including:Organic fluorine compounds-PFAS screening: EPA 1621; PFAS targeted and non-targeted analysis: EPA 537.1, EPA 1633; Pharmaceuticals and personal care products: EPA 1694; Agricultural chemicals: pesticides, herbicides-targeted and non-targeted analysis: various methods GC-MS/MS and LC-MS/MS; Volatile organic compounds: EPA 8260D (SW-846); Semivolatile organic compounds: EPA 8270E (SW-846); Dioxins and furans: EPA 23; Total petroleum hydrocarbons: EPA 8440; Microplastics and nanoplastics.

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• RRID
• 1 year ago - submitted by Odette Mina

How do the recent developments in neuroscience affect psychology and society? Today, many new findings challenge the way we think about ourselves and others. These changes impact on how we should think about issues such as the self, mentality, psychology, free will, morale, law and society. Through interviews of prominent scholars in the fields of neuroscience and beyond, the BrainEthics Podcast provides updated, novel and comprehensive news and views from the world of neuroscience, and how the world responds to it. We provide a full list of all podcast episodes. Although we are hosting all episodes, you can also subscribe to the podcast on all major podcasting directories.

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• SciCrunch
• 15 years ago - by Anonymous

Formerly Center for Genome Research and Biocomputing Core Facility. Functions and facilities include services in genomics, functional genomics, genotyping and imaging.Biocomputing facilities with computing infrastructure, which includes managed cloud and shared resources, data analyses and training are customized to individual needs, including genome assembly and annotation, analysis of RNAseq, GBS, and metagenomics data, and GPU-enabled deep learning analyses.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Core provides facility to conduct experimental research on neutron irradiated materials in aqueous environments. The IMTL consists of five refreshed autoclaves that can be mounted in constant extension rate or crack growth rate configurations. Capable of conducting experiments on stress corrosion cracking of neutron irradiated material in supercritical water.

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• RRID
• 1 year ago - submitted by Edyta Vieth

Learn About SMA is a resource for spinal muscular atrophy (SMA) patients, families and researchers. The site includes stories of living with SMA and recent advances in the understanding and potential treatment of SMA. Learn About SMA is divided into five sections with video interviews, animations, and narrative. What is SMA? includes interviews with doctors and patients, plus an animation explaining the cause, inheritance and diagnosis of SMA. SMA Science provides an introduction to the genes and mechanisms involved with SMA, including 2-D and 3-D animations and interviews with Nobel Laureates. * In SMA Therapies doctors discuss current and potential treatments for SMA and a father describes the daily routine of physical therapies for his daughter, who has SMA. Antisense Therapy for SMA includes videos and animations to explain antisense therapy for SMA. In Living with SMA four SMA families describe daily routines, disease progression, children''s understanding of SMA, and grieving.

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• SciCrunch
• 15 years ago - by Anonymous

Utilities to compute Wasserstein distance between persistence diagrams. Project has been renamed to Hera.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Core provides instruments including Becton-Dickinson FACSCelesta or ACEA NovoCyte flow cytometer for use after training . Pathology core staff member is assigned to support instruments, answer questions, and, offer on-demand hardware, software, fluidics and technical expertise. Instrument users must ultimately run their own samples and be responsible for technical and scientific legitimacy of their experiments.

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• RRID
• 1 year ago - submitted by Edyta Vieth

Wandora is a general purpose information extraction, management and publishing application based on Topic Maps and Java. Wandora has graphical user interface, layered and merging information model, multiple visualization models, huge collection of information extraction, import and export options, embedded HTTP server with several output modules and open plug-in architecture. Wandora is a FOSS application with GNU GPL license. Wandora is well suited for constructing ontologies and information mashups. Wandora is capable of extracting and converting a wide range of open data feeds to topic map formats. Beyond topic map conversion, this feature allows Wandora user to aggregate multidimensional information mashups where information from Flickr interleaves with information from GeoNames and YouTube, for example. Wandora is a software application to build, edit, publish and visualize information graphs, especially topic maps. Wandora is written in Java and suits for * Collecting, combining, aggregating, managing, refining and publishing information and knowledge graphs * Designing information, information modeling and prototyping * Information mashups * Ontology creation and management * Mind and concept mapping * Language technology applications * Graph visualizations * Knowledge format conversions * Digital preservation * Data journalism * Open data projects * Linked data projects Platform: Windows compatible, Mac OS X compatible, Linux compatible, Unix compatible

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• SciCrunch
• 15 years ago - by Anonymous

Ruby Gem with bioinformatics tools for processing viral NGS data. Specifically for Primer-ID sequencing and HIV drug resistance analysis.

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• RRID-Legacy
• 7 years ago - submitted by Nathan Anderson

The Max Planck Institute of Neurobiology was a research institute of the Max Planck Society located in Martinsried, a suburb of Munich in Germany. It existed between 1984 and 2022 and merged with the Max Planck Institute for Ornithology to the new, joint Max Planck Institute for Biological Intelligence in 2023. The institute is dedicated to basic research on topics in behavioral ecology, evolutionary biology and neuroscience.

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• SciCrunch
• 15 years ago - by Anonymous

Opasnet is a wiki-based website and workspace for helping societal decision making. The website collects, synthesizes, and distributes people''s values and scientific information. Opasnet welcomes anyone who wants to promote science-based decision-making in any field. The specialty is that the information is structured for both scientific scrutiny and for policy use at the same time. In practice, you can do original research, store data, make models, and perform policy assessments and discuss all of that work in one workspace. Originally, the developers of Opasnet came from the environmental health, i.e. a research field that studies the impacts of environment on human health. We are actively working, among other things, on climate change and air pollution, but you can also start a new assessment about a decision of your own interest, or participate in an existing assessment. Opasnet is a website that has basically two parts. One part is a wiki site (called Opasnet wiki or simply Opasnet) that has descriptive pages with text, figures, and tables; it also contains files. The other part is a database called Opasnet Base that contains quantitative estimates about anything that is described in Opasnet. The majority of information is openly available. However, both Opasnet wiki and Opasnet Base have a protected area for working with material that is non-public for some reason.

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• SciCrunch
• 15 years ago - by Anonymous

Software R package for visualization and annotation of phylogenetic trees with their covariates and other tree like structures with their annotation data. Can import evolutionary data from different tree file formats and analysis programs as well as other associated data from experiments so that various sources and types of data can be displayed on tree for comparison and further analyses.

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• RRID-Legacy
• 7 years ago - submitted by Nathan Anderson