Curator Dashboard

Software R package for analyzing UMI-4C chromatin contact data. Used to analyze chromatin contact profiles obtained by UMI-4C.

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• dkNET
• 5 years ago - submitted by Ko-Wei Lin

Core provides in house investigators and external clients with equipment for multiparameter flow cytometric analysis and cell sorting, training and expert assistance with various techniques in flow cytometry,cell sorting as well as consultation in experimental design, data analysis, presentation, and publication.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software to design gRNAs pools in non-model genomes and CRISPR-Cas systems. Used to design CRISPR-Cas guide RNA pools in non model genomes.

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• SciCrunch
• 5 years ago - submitted by Adam Rivers

Software R package as recursive partitioning for classification, regression and survival trees. Implementation of most of functionality of 1984 book by Breiman, Friedman, Olshen and Stone.

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• RRID-Legacy
• 5 years ago - submitted by Ron Gadot

Software tool as structural variant classifier for exonic deletions and duplications. Supervised learning method to predict pathogenicity of human genome structural variants.Used to distinguish pathogenic SVs from benign SVs that overlap exons.

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• RRID-Legacy
• 5 years ago - by Anonymous

Core provides services for Experimental Design, Metagenomics, Comparative Expression Analyses, Variant Analyses, and Systems Biology. Overarching umbrella encompassing four distinct shared resource facility arms: DNA Analysis,Microarray,Massively Parallel Sequencing Facilities,Bioinformatics Shared Resource.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Single photon avalanche diodes camera for time correlated single photon counting imaging. Time resolved photon counting camera with in pixel timing electronics what enables time tagging of incoming photons with accuracy of 55ps.

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• RRID-Legacy
• 5 years ago - submitted by Tsz Kit Yung

Dual beam FIB/FESEM system, containing both focused Ga plus ion beam and ultra high resolution field emission scanning electron column and their combined use. Dual beam focused ion beam scanning electron microscope for nanofabrication.

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• RRID-Legacy
• 5 years ago - submitted by Tsz Kit Yung

Core helps to carry out analysis and research on SARS-COV2 virus. Provides COVID-19/ SARS-COV2/ 2019-nCoV Research Tools and Services.Team has developed related proteins, antibodies, nucleic acid extraction kits and other products to help researchers quickly develop effective anti-COVID-19 drugs and vaccines.Provides preclinical research services, various in vivo and in vivo research models, and in vivo diagnostic immunoassay services.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software implements germline and somatic variant calling pipelines based on best practices pipelines from Broad Institute using Spark framework. Produces VCF output file which contains single nucleotide polymorphisms (SNPs) and short insertions and deletions (indels) when supported by used tools. Program requires Spark on either local cluster with one or more nodes, Amazon EMR cluster or Docker image to run.

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• SciCrunch
• 5 years ago - submitted by Dries Decap

Software tool can be used to calculate kappa, chance adjusted measure of agreement, for any number of cases, categories, or raters.

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• RRID-Legacy
• 5 years ago - by Anonymous

Platform for prospective epidemiologic study conducted in four U.S. communities. One of most significant and longest running heart health studies and is the largest study of heart health in African Americans. ARIC investigates risk factors for heart disease and stroke, and connections between cardiovascular and cognitive health. ARIC includes two parts: Cohort Component and Community Surveillance Component. Cohort Component began in 1987, and each ARIC field center randomly selected and recruited cohort sample of individuals aged 45-64 from defined population in their community, to receive extensive examinations, including medical, social, and demographic data. In Community Surveillance Component, four communities are investigated to determine long term trends in hospitalized myocardial infarction and coronary heart disease deaths in men and women aged 35-84 years.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software tool for image acquisition using WiFi-enabled Zeiss microscopes. Compatible with Windows PCs and with Apple tablets., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• RRID-Legacy
• 5 years ago - by Anonymous

Custom service provider that has extensive experience in various antibody production and engineering fields.Services includes mouse and rat monoclonal antibody production using hybridoma technology, human, monkey, rabbit, chicken, dog, llama and camel monoclonal antibody production using various antibody library technologies (including phage display, bacterial display and yeast display).Conducting in depth antibody humanization and affinity maturation using phage display and DNA mutagenesis approaches.OEM services for bulk scale antibody manufacturing, including bacterial production of scFv, diabody, tandem scFv, miniantibody and Fab, and mammalian cell expression of minibody, chimeric IgG, and IgG, are also available at the most competitive price in industry.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Core offers access to computational biology capabilities. Provide services, foster long term collaborations with UAB research community, and provide training for biomedical investigators on specific set of analysis tools and techniques.Places special emphasis in areas of genomics, transcriptomics, systems biology and translational medicine. Services include data analysis, biological interpretation, grant assistance, and training.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

BOC Sciences provides wide range of research chemicals and biochemicals including inhibitors, building blocks, GMP Products, impurities and metabolites, APIs for Veterinary, Natural Compounds, ADCs, Stem Cell Molecule and chiral compounds.

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• SciCrunch
• 5 years ago - by Anonymous

Software tool to perform rapid fluorescence and morphometric real time, synchronous data acquisition with IonOptix systems, as well as polynomial fitting and analysis for myocyte research. Features include data trace averaging and filtering,composite images, and transient analysis. Integrates presentation of fluorescence traces and images, analog voltages, and cell length data under intuitive interface. Analyzes raw data by performing ratio, ion, or linear calibration calculations.

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• RRID-Legacy
• 5 years ago - by Anonymous

Open source relational database management system that is compatible drop in replacement for MySQL database technology. Includes selection of storage engines, including high performance storage engines, for working with other RDBMS data sources. Uses standard and popular querying language. Runs on number of operating systems and supports wide variety of programming languages.Modern Relational Database SQL on JSON support.

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• dkNET
• 5 years ago - submitted by Maryann Martone

Web based interface designed for academic research data management and research data dissemination. Accepts all file types. Enables academics to upload, share, cite and discover all manner of research outputs with security of knowing our hosting options and platform support long term preservation of data.Used to share big datasets from 100GB up. Added features and expert guidance are also included for sharing your data FAIR-ly.During data deposit, personal email support is available and once submitted, Figshare data expert will conduct review of the metadata and spot check of your dataset files and offer guidance, with main aim of enhancing discoverability and reusability.

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• RRID-Legacy
• 5 years ago - submitted by Edyta Vieth

Knowledgebase of biomedical research resources. Repository for storing validation and problematic information about variety of entities within biomedical domain, such as antibodies, cell lines, etc. Enables researchers to submit their own claims about specific entity to make validation/problematic information F.A.I.R. (Findable, Accessable, Interoperable, Reuseable).

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• RRID-Legacy
• 5 years ago - submitted by Edyta Vieth