Curator Dashboard

Portal to make all Human Pancreas Analysis Program data available to anyone in research community and to interact with and connect scientific community. Stores clinical, molecular, cellular, immunology, imaging, and pathology data from pancreatic tissue and cell samples from organ donors with and without type 1 or type 2 diabetes.

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• dkNET
• 5 years ago - submitted by Maryann Martone

Web tool for integrative visualization of multiple omic datasets onto KEGG pathways. Supports integrated visualization of multiple species of different biological kingdoms and offers user possibility to request any other organism present in KEGG database.

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• dkNET
• 5 years ago - submitted by Maryann Martone

Software tool implements Damerau-Levenshtein (DL) edit distance algorithm for Python in Cython for high performance.

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• RRID-Legacy
• 5 years ago - by Anonymous

Provides range of mass spectrometry based services including small molecule analysis and quantitation, peptide and protein MW determination; MS based proteomics services and associated bioinformatics including: global proteome IDs and targeted proteomics, post-translational modification mapping, quantitative proteomics, consultation for designing proteomics experiments, thermal protein profiling and cellular thermal shift assay analysis.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software as automated pipeline method to close gaps in assemblies with long reads. Used to close assembly gaps using long reads at high accuracy.

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• SciCrunch
• 5 years ago - submitted by Arne Ludwig

Cat# AH158

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• RRID-Legacy
• 5 years ago - submitted by Peng Wang

Software tool as biophysical simulation model for livestock systems. It has flexible interface for setting up and running simulations with extensive graphical and data output.

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• RRID-Legacy
• 5 years ago - by Anonymous

Amersham Imager 600 is CCD camera system that produces digitial images of samples in gels or membranes in three different modes: chemiluminescence, colorimetric and fluorescent image capture. Provides imaging system to capture and analyze protein and DNA sample gels and membranes in high resolution.

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• RRID-Legacy
• 5 years ago - by Anonymous

Imaging Core at CCF FRIC provides access to advanced imaging technologies, including: Wide-field and confocal fluorescent microscopes, FLIM capability, Live cell imaging microscopes, Pre-clinical imaging microscopes, BSL-3 imaging platforms for pre-clinical and basic research microscopy projects.Provides consultation on experimental design and optimization, post-acquisition image processing, and support for analysis, visualization, and interpretation of data.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Web tool for automated generation of interactive disease-disease network visualizations given input PheWAS summary data.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software tool to predict whether amino acid substitution affects protein function. Faster version of SIFT that enables to scale up and provide SIFT predictions for more organisms.

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• RRID-Legacy
• 5 years ago - submitted by Chong Han Ng

Web server for predicting impact of mutations on protein conformation, flexibility and stability.

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• RRID-Legacy
• 5 years ago - submitted by Chong Han Ng

Circos is a software package for visualizing data and information. It visualizes data in a circular layout — this makes Circos ideal for exploring relationships between objects or positions. There are other reasons why a circular layout is advantageous, not the least being the fact that it is attractive. Circos is ideal for creating publication-quality infographics and illustrations with a high data-to-ink ratio, richly layered data and pleasant symmetries. You have fine control each element in the figure to tailor its focus points and detail to your audience.

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• RRID-Legacy
• 5 years ago - submitted by Chong Han Ng

Database of global evaluation of SARS-CoV-2/hCoV-19 sequences.Provides comprehensive analysis results based on tens of thousands of high-coverage and high-quality SARS-CoV-2 complete genomes.

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• RRID-Legacy
• 5 years ago - submitted by Chong Han Ng

Software Python tool to retrieve biodiversity data stored in NCBI databases and provide simple and explorable visualization. Used to elaborate and visualize molecular and taxonomic informations. Allows creation of interactive plots starting from NCBI search query or directly from offline taxonomic files.

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• SciCrunch
• 5 years ago - submitted by Giulia Agostinetto

Core provides advanced microscopes, image analysis tools, and technical support to facilitate your microscopy research. Offers consultations to determine appropriate microscope for your specific needs and proper design of your experimental set up.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Core offers cell sorting and high dimensional flow cytometric analysis as well as training, consultation and single cell partitioning for scRNA seq (10x).

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Web tool for automated generation of interactive disease-disease network visualizations given input PheWAS summary data. Given genetic associations from Phenome-Wide Association Study, disease-disease network can be constructed where nodes represent phenotypes and edges represent shared genetic associations between phenotypes.

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• RRID-Legacy
• 5 years ago - by Anonymous

Web tool to estimate biological activity profiles for compounds under study based on their structural formula presented in MOLfile or SDfile format. General list of predictable biological activities consists of terms including pharmacotherapeutic effects, biochemical mechanisms, toxicity, metabolism, gene expression regulation, transporter related activities. Prediction is based on knowledge base about structure activity relationships for compounds with known biological activities.

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• RRID-Legacy
• 5 years ago - by Anonymous

Portal to find consumer friendly information about drugs for cancer and conditions related to cancer. The list is in alphabetical order by generic name and brand name.

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• RRID-Legacy
• 5 years ago - by Anonymous