Curator Dashboard

Software R package that provides classes and methods for spatial data.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software R package to identify cells with active gene sets in single cell RNA-seq data. Used for analysis of gene set activity in single cell RNA-seq data.Used to calculate whether critical subset of input gene set is enriched within expressed genes for each cell.

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• RRID-Legacy
• 5 years ago - by Anonymous

Analyst module for statistical analysis and interactive visualization of complex data such as genotype, phenotype, and omics data. Provides data mining solution that can be integrated into existing research IT environments with rich set of APIs. Supports integration of R scripts.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software R package for interfacing with genome browsers.Supports integration of existing genome browsers with experimental data analyses performed in R. R interface to genome annotation files and UCSC genome browser.

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• RRID-Legacy
• 5 years ago - by Anonymous

Open source software R package for interacting with common Bioconductor classes Ranges and GenomicRanges. Grammar of genomic data transformation. Provides grammatical and consistent way of manipulating these classes to increase accessiblity for new Bioconductor users.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software tool as ChIP-seq pipeline for processing ChIP-seq reads, aligning to reference genome, peak calling, and IDR analysis of replicate data according to ENCODE standards.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software package to retrieve nearest genes around peak, annotate genomic region of peak, implements statstical methods for estimate significance of overlap among ChIP peak data sets, and incorporate GEO database for user to compare own dataset with those deposited in database.Several visualization functions are implemented to summarize coverage of peak experiment, average profile and heatmap of peaks binding to TSS regions, genomic annotation, distance to TSS, and overlap of peaks or genes.

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• RRID-Legacy
• 5 years ago - by Anonymous

Provides access to high parameter cell analysis and sorting instrumentation along with scientific expertise.Services provided include Cell Sorting,FACS Cell Sorting,Flow Cytometric Analysis,Multi-color Flow Cytometry,Spectral Flow Cytometry.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Open source software tool for visually exploring ploidy with Next Generation Sequencing data.Used to visualize and explore ploidy levels in newly sequenced genome, exploiting short read data. Allows identification of ploidy level of newly sequenced genome in visual way. Implemented in Python and R.

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• RRID-Legacy
• 5 years ago - submitted by Renato Augusto Corrêa dos Santos

Software R package creating customizable presentation ready tables, summarizing data sets, regression models, and more. Used for publication ready data summary and analytic result tables.

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• RRID-Legacy
• 5 years ago - submitted by Ron Gadot

Supercomputer user facility operated by Lawrence Berkeley National Laboratory for the United States Department of Energy Office of Science.Houses high performance computing and data systems used by scientists at national laboratories and universities around the country.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software R package for statistical analysis of phenotypic data.Tool kit for standardized analysis of high throughput phenotypic data.

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• RRID-Legacy
• 5 years ago - by Anonymous

LED illumination system for transmitted light applications, including brightfield, darkfield, DIC, Dodt gradient contrast and phase contrast. Includes LED illuminator and controller.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software tool for video editing. Used for social sharing, TV, and film.

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• RRID-Legacy
• 5 years ago - by Anonymous

Provides services using mass spectrometry, including identification and relative quantification of proteins and several advanced methods for profiling and quantitation of small molecules.Provides outreach and education program including workshops,seminars and courses.Proteomics services include Bottom-up Proteomics of whole organisms, organs, organelles, tissues, cell pellets, pulldowns, complex or single protein mixes from solutions or gels;Quantification by label-free or multiplexed labeling techniques with microscale subfractionation to increase coverage;Post Translational Modification Characterization especially phosphopeptide enrichment from whole organism digests, but also ubiquitylation, acetylation, etc.Metabolomics services include Untargeted Quantification of small molecules;Primary metabolism using GC-MS and NIST/Fiehn Libraries;Secondary metabolism using LC-MS and Progenesis QI, NIST Library, mzCloud;Targeted Quantification using HPLC or LCMS.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Open source software tool as adapter and quality trimmer for Next-Generation Sequence data.

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• SciCrunch
• 5 years ago - submitted by Jiacheng Chuan

Software pipeline for single-nucleus RNAseq data generated by Smart-seq2 assays.Used to simultaneously process multiple libraries of single nuclei Smart-seq2 and Smart-seq4 data. For each library (nucleus), the pipeline trims paired FASTQ files, aligns trimmed reads to the genome, counts intronic and exonic reads, and calculates quality control metrics. Counts and metrics for all libraries are combined into merged Loom formatted count matrix.

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• RRID-Legacy
• 5 years ago - submitted by Elizabeth Kiernan

Portal within Wikipedia platform for presenting content, tools, and discussion related to clinical trials.Anyone can join to express their interest in developing content in Wikidata related to clinical trials.

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• 5 years ago - submitted by Lane Rasberry

Web app based tool as one of GLOBE Observer tools. Used to document what is on land. Once you have downloaded the app and created account, Land Cover tool will guide you through observation process. You will report on current surface conditions, then take photographs in all four cardinal directions, up and down. Optionally, you can classify land cover in your photographs, telling if it is grassland,forest or urban area, as well as compare your classification to satellite land cover observation and note any differences.

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• RRID-Legacy
• 5 years ago - by Anonymous

Open Source software library for molecular simulation applications. Provides ready-to-use implementations of standard algorithms.Serves as code basis that can be easily extended and modified to deal with standard and non standard problems in molecular simulations.

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• RRID-Legacy
• 5 years ago - by Anonymous