Curator Dashboard

Software R package for landscape and ecological associations studies.Dedicated to genomewide association tests in general, with emphasis on association with ecological gradients. Runs analyses of population structure and scans for genomic signatures of local adaptation.

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• RRID-Legacy
• 4 years ago - submitted by Brandon Pickett

Software R package for fast Principal Component Analysis for outlier detection.Used to detect genetic markers involved in biological adaptation. Performs genome scans for selection based on principal component analysis.

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• RRID-Legacy
• 4 years ago - submitted by Brandon Pickett

Software tool to identify candidate loci under natural selection from genetic data, using differences in allele frequencies between populations.

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• RRID-Legacy
• 4 years ago - submitted by Brandon Pickett

Software package provides comprehensive framework for evaluating, filtering, and analyzing gene models from range of input applications and preparing these annotations for formal publication or downstream analysis.

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• RRID-Legacy
• 4 years ago - submitted by Brandon Pickett

Software interactive toolkit for assembly and analysis of restriction site associated genomic data sets including RAD, ddRAD, GBS, for population genetic and phylogenetic studies. Used for interactive assembly and analysis of RADseq data sets.

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• RRID-Legacy
• 4 years ago - submitted by Brandon Pickett

Software tool as simple script to calculate N50/NG50 and auN/auNG.

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• RRID-Legacy
• 4 years ago - submitted by Brandon Pickett

Software tool for scaffolding with RNA-seq read alignments. Used for improving genome assembly with RNA sequencing data.

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• RRID-Legacy
• 4 years ago - submitted by Brandon Pickett

Software tool for scaffold long read assemblies with Hi-C data.

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• RRID-Legacy
• 4 years ago - submitted by Brandon Pickett

Software tool as hybrid method for correcting noisy long reads, such as the ones produced by PacBio sequencing technology. Used for correcting long reads by mapping short reads.

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• RRID-Legacy
• 4 years ago - submitted by Brandon Pickett

Software tool as kmer based error correction method for RNAseq data. Can also be applied to other types of sequencing data where read coverage is nonuniform, such as single cell sequencing. Used for error correction for Illumina RNAseq reads.

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• RRID-Legacy
• 4 years ago - submitted by Brandon Pickett

Software tool for estimating k-mer coverage histogram of genomics data. Streaming algorithm for estimating frequencies of k-mers in genomics datasets.

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• RRID-Legacy
• 4 years ago - submitted by Brandon Pickett

Portal for traumatic brain injury data. Common Data Elements (CDEs) and Unique Data Elements (UDEs) for digital neuropathological data and clinical data that will be collected in all CONNECT-TBI center projects. Goal is to establish multi-center, digital neuropathological data and clinical data reporting network with case accrual from each center project. Collected neuropathological data and clinical data available by sharing with center site investigators approved by Administrative Core and by submitting into FITBIR. Central TBI data repository by collecting digital neuropathological data and clinical data from TBI cases and normal controls at each center and posting library of their holdings.

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• RRID-Legacy
• 4 years ago - submitted by Anita Bandrowski

Software pipeline to analyse genome data from forward genetic screen. Identification of causal variants for specific phenotype.

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• SciCrunch
• 4 years ago - submitted by Mario de Bono

Software analysis toolkit for tracking blobs and extracting intensity values from imaging data, designed for use with ratiometric fluorescent sensors.

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• SciCrunch
• 4 years ago - submitted by Mario de Bono

Software tool as multiworm tracker. Can be used as analysis toolkit for extracting morphological and behavioural data from videos of objects moving in 2D environment.

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• SciCrunch
• 4 years ago - submitted by Mario de Bono

Core facility that provides statistical expertise for benefit of advancing quality of scientific research and education at CSU and beyond, while educating next generation of applied statisticians.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Core facility that provides social science research expertise and resources for design, collection, management, analysis, and dissemination of original social science data, including interviews, focus groups, surveys, photo voice, social network analysis, program evaluation, team assessments, and mixed method studies.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Offers consultation on drone systems, UAS project guidance, UAS piloting, assistance with UAS pilot training, liaison and navigation of FAA regulations, and as point of contact for UAS inquiries from outside the University. Assists in authorizing flight requests at CSU and managing Christman Airfield use for drone flights. Maintains fleet of sUAS aircraft and air borne sensors.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Core facility that enables research and development programs by providing expertise and access to equipment for synthesis, processing and testing of materials. Support and enables materials research and education by offering range of materials synthesis, processing, and testing equipment, combined with individualized training and staff expertise.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Core facility that provides technical guidance, project support, and diverse training opportunities in geospatial sciences. With expertise in geographic information systems, spatial analysis, web mapping, and cartography, Centroid supports researchers in spatial data development, analysis, visualization, and publication ready maps.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth